Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10790 627 / 0 UBP22 ubiquitin-specific protease 22 (.1) AT4G24560 135 / 3e-33 UBP16 ubiquitin-specific protease 16 (.1) AT4G17895 134 / 4e-33 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 129 / 2e-31 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 121 / 5e-29 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 115 / 2e-27 UBP19 ubiquitin-specific protease 19 (.1.2) AT2G22310 112 / 7e-27 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT3G14400 112 / 9e-26 UBP25 ubiquitin-specific protease 25 (.1) AT4G39910 108 / 2e-25 ATUBP3 ubiquitin-specific protease 3 (.1) AT1G17110 110 / 3e-25 UBP15 ubiquitin-specific protease 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017000 [exp] 1013 / 0 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G123200 [exp] 562 / 0 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1) Potri.018G107500 [exp] 132 / 3e-32 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.003G092400 [exp] 131 / 4e-32 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.006G185200 [exp] 129 / 4e-31 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.002G104800 [exp] 123 / 4e-29 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.005G156900 [exp] 121 / 2e-28 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G394600 [exp] 120 / 2e-28 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G142000 [exp] 119 / 4e-28 AT5G46740 350 / 9e-109 ubiquitin-specific protease 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043127 [exp] 140 / 4e-35 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 137 / 1e-33 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10043126 [exp] 131 / 7e-32 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 127 / 2e-30 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10020116 [exp] 126 / 2e-30 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10026918 [exp] 126 / 2e-30 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 125 / 1e-29 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10036607 [exp] 124 / 2e-29 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10041705 [exp] 112 / 9e-27 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 112 / 9e-27 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G266100.1 pacid=42770709 polypeptide=Potri.006G266100.1.p locus=Potri.006G266100 ID=Potri.006G266100.1.v4.1 annot-version=v4.1 ATGGAAACAAGGAGCTCTGTGTTTGCAAACCCAAAACCCTGTAAGCATCTTGCAGATTATAAGCTGAGGCATGGCTTGAGTGGATACAAATTCCTTCAAA AATGGCTCAAAACCTTTCCAAATGGAAAGACAAGCATTAAAATGTGTGAAACAAAGATGCCCAAATGCAGTTTTTGTAGTGGGATTCGTCAAGGTAGACT GTTTCTGTGTTTGATTTGTTCTTCAATGTCTTGTTCAGACCATACCCTTTTGCATAGTCAATCTGAGAATGGCCATGATATAGCTGTTGACATTGAAAGA TCAGAACTTTATTGTTGTTCTTGTAGTGATCAGGTCTATGACCTTGATTTTGATAAGGTAGTTGTGGCTAAAAATATTGTGGATATGCCAAGTAAGACAC GTGATAGTGTTGTTGATGATTTAATGAGGAGATCAAGCAAGAGGAGGAGGTTGAATTCAGTGGTGGATTTGGATTTGATAAGGTCTAAATTTTTTGTTTG GATGAGGGGTCGAAGGGCCAAATCGTGCTATCCATTGGGATTAAGAGGATTGAATAATTTGGGCAGTACTTGTTTCATGAATTCTATTTTGCAAGCTTTG CTCCATGCACCACCGTTCAGGAATTACTTCTTGAGTGAGAGACACGACCGTGAAACTTGTAGGAAAAGATCATCGGATCAATCGTGTTTGGCTTGTGATA TTGGTGTAATTTTCTCAGCTGTTTATTCCGGGGATCGGACACCTTATAGTCCAGCTCAGTTTCTTTACAGTTGGTGGCAGCATTCGGCAAATCTAGCTAG CTACGAGCAGCAGGATGCTCATGAATTCTTCATTTCAGTGTTAGATGGAATCCATGAGAGAGAGGGAAAGGAGAGAAATCCAAACAAAGATAATGGAGAT TGTCAGTGTATTGCTCATAGGGTTTTCTCAGGTATGCTAAGATCAGATCTAACCTGCACAACTTGTGGGTTTACTTCCACAACTTACGACCCTTGTGTTG ACATTTCGCTCAACATGGACACAAGCAGCTTTTCTTCAGTGGATGTGGCTAACAAATCTGTTAGGCCGAATGAGGACACCGGCAGTTCTACCCTTTTGGC TTGTTTGGATCTGTTCACAAGGCCTGAGAGGTTGGGGTCTGATCAGAAACTGTACTGCCAAAATTGTCAAGAAAAGAGGGACTCGTTGAAGCAAATGTCT ATTAAAAGGCTTCCACTGGTCTTGTCATTGCATATCAAGCGGTTTGAGCACTCTTCCTTGAGAAGAACATCAAGAAAAATTGATTGGCATTTACAGTTTC CTTTTTCTCTGGATATGACCCCATATTTATCTCCATCAATTGTCAGAAACAGGTTTGGAAATAGAATTTTTGGGTTTGAGAGTGATGAAGCGGATATCTC TGCAGAATTTGAGATTTTTGCTGTAGTCACTCATTCTGGGATGCTAGACTCAGGTCATTACGTGACTTATCTGCGCCTGCAAAACCAATGGTACAAGTGC GATGATGCTTGGATTACTGAAGTTGATGAGAGGATTGTGAGAGCGTCACAGTGTTATATGATTTTCTATGTGCAGAGGATGCTTTATTACAAAGCAAATG AGGATTTGAGTTGCACGCCAATGCCTTCAAGGAGGGACCCGTTTGTTCCGATTGCCGGTTGTTGCTGA
AA sequence Show only first row Show all	>Potri.006G266100.1 pacid=42770709 polypeptide=Potri.006G266100.1.p locus=Potri.006G266100 ID=Potri.006G266100.1.v4.1 annot-version=v4.1 METRSSVFANPKPCKHLADYKLRHGLSGYKFLQKWLKTFPNGKTSIKMCETKMPKCSFCSGIRQGRLFLCLICSSMSCSDHTLLHSQSENGHDIAVDIER SELYCCSCSDQVYDLDFDKVVVAKNIVDMPSKTRDSVVDDLMRRSSKRRRLNSVVDLDLIRSKFFVWMRGRRAKSCYPLGLRGLNNLGSTCFMNSILQAL LHAPPFRNYFLSERHDRETCRKRSSDQSCLACDIGVIFSAVYSGDRTPYSPAQFLYSWWQHSANLASYEQQDAHEFFISVLDGIHEREGKERNPNKDNGD CQCIAHRVFSGMLRSDLTCTTCGFTSTTYDPCVDISLNMDTSSFSSVDVANKSVRPNEDTGSSTLLACLDLFTRPERLGSDQKLYCQNCQEKRDSLKQMS IKRLPLVLSLHIKRFEHSSLRRTSRKIDWHLQFPFSLDMTPYLSPSIVRNRFGNRIFGFESDEADISAEFEIFAVVTHSGMLDSGHYVTYLRLQNQWYKC DDAWITEVDERIVRASQCYMIFYVQRMLYYKANEDLSCTPMPSRRDPFVPIAGCC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.006G266100 [exp]	0	1
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	7.74	0.7759
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	9.21	0.7962
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.004G047000 [exp]	10.67	0.7993
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	12.48	0.7991
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.014G192800 [exp]	15.87	0.7687
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	15.87	0.7682
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.001G152150 [exp]	16.79	0.7949
AT5G01270		CPL2, ATCPL2	carboxyl-terminal domain (ctd)...		Potri.006G099402 [exp]	19.84	0.8005
AT2G46560			transducin family protein / WD...		Potri.002G173300 [exp]	21.21	0.7766
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	24.97	0.7684

Compare expression of checked genes

Potri.006G266100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.