Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24940 160 / 1e-52 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT5G52240 105 / 4e-30 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2) AT3G48890 102 / 2e-28 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT4G14965 74 / 3e-17 ATMAPR4 membrane-associated progesterone binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016900 [exp] 185 / 9e-63 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.015G125100 [exp] 109 / 2e-31 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 107 / 2e-30 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.012G137800 [exp] 104 / 3e-29 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.016G022700 [exp] 72 / 2e-16 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002241 [exp] 162 / 1e-53 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10029567 [exp] 165 / 6e-51 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10038356 [exp] 112 / 2e-32 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 107 / 2e-30 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 107 / 3e-30 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10027449 [exp] 107 / 3e-30 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 106 / 4e-30 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10034799 [exp] 85 / 3e-23 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1) Lus10018026 [exp] 74 / 4e-17 AT4G14965 361 / 3e-127 membrane-associated progesterone binding protein 4 (.1) Lus10042022 [exp] 64 / 2e-13 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G266200.1 pacid=42769144 polypeptide=Potri.006G266200.1.p locus=Potri.006G266200 ID=Potri.006G266200.1.v4.1 annot-version=v4.1 ATGGATTTCACAACAGATCAACTTCTTCAATACAATGGCACGGACCCTTCCAAATCCATCTACGTAGCAATCAAAGGAAGAGTCTTTGATGTGATGACAA GCAAAAGCTTTTATGGACCAGGTGGTTCTTATGTAATATTTGCAGGCAAAGATGCAAGCAGGGCTTTAGCTAAAATGAGTAAAAATGATGAAGACATCTC TTCTTCATTATATGGACTTATTGAGAAAGAGATTGGTGTGCTTGATGATTGGGAAAAGAAGTTTGAGGCCAAGTACCCTGTTGTTGGTCGTGTTGTGTCT TAA
AA sequence Show only first row Show all	>Potri.006G266200.1 pacid=42769144 polypeptide=Potri.006G266200.1.p locus=Potri.006G266200 ID=Potri.006G266200.1.v4.1 annot-version=v4.1 MDFTTDQLLQYNGTDPSKSIYVAIKGRVFDVMTSKSFYGPGGSYVIFAGKDASRALAKMSKNDEDISSSLYGLIEKEIGVLDDWEKKFEAKYPVVGRVVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.006G266200 [exp]	0	1
AT2G47760		AtALG3, ALG3	Arabidopsis thaliana asparagin...		Potri.014G131600 [exp]	2.44	0.9666
AT5G62280			Protein of unknown function (D...		Potri.002G147200 [exp]	4.35	0.9587
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.009G082700 [exp]	10.39	0.9676
AT3G62790			NADH-ubiquinone oxidoreductase...		Potri.002G204800 [exp]	13.71	0.8166
AT4G33870			Peroxidase superfamily protein...		Potri.003G053700 [exp]	16.24	0.9469
AT4G04650			RNA-directed DNA polymerase (r...		Potri.011G086901 [exp]	16.97	0.8562
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.004G020800 [exp]	18.22	0.8984
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.016G093900 [exp]	18.49	0.8347
AT1G15780			unknown protein		Potri.003G026510 [exp]	18.84	0.9041
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.004G109800 [exp]	20.78	0.9591

Compare expression of checked genes

Potri.006G266200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.