Plant FIBer expression Database

Potri.006G266400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32140 397 / 6e-137 EamA-like transporter family (.1)
AT3G07080 84 / 2e-17 EamA-like transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G024700
[exp]
408 / 2e-141 AT4G32140 581 / 0.0 EamA-like transporter family (.1)
Potri.006G257000
[exp]
398 / 2e-137 AT4G32140 566 / 0.0 EamA-like transporter family (.1)
Potri.014G189500
[exp]
94 / 5e-21 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041032
[exp]
392 / 3e-135 AT4G32140 607 / 0.0 EamA-like transporter family (.1)
Lus10006194
[exp]
391 / 8e-135 AT4G32140 610 / 0.0 EamA-like transporter family (.1)
Lus10042422
[exp]
347 / 1e-113 AT4G32140 390 / 3e-130 EamA-like transporter family (.1)
Lus10026249
[exp]
296 / 1e-97 AT4G32140 320 / 3e-107 EamA-like transporter family (.1)
Lus10011864
[exp]
80 / 4e-16 AT3G07080 453 / 1e-158 EamA-like transporter family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF00892 EamA EamA-like transporter family
Representative CDS sequence
>Potri.006G266400.2 pacid=42767936 polypeptide=Potri.006G266400.2.p locus=Potri.006G266400 ID=Potri.006G266400.2.v4.1 annot-version=v4.1
ATGGGTTGGAAGTACAAAGCTGGGTTAGGATTGATTAGCACTGTTGTGATAATATGGGTCACTTCTGCAGAAGTCACTCAGCGAATCTTTGAAATGTATA
AACAACCATTTGCAATCACGTATCTGGGGGTATCTCTTATGGTGGTCTATCTACCTATAGCACTTGTAAGAGACTGGTTCTGTAGCTTGTTCAATTCTGG
TTTGTCTATGAACCTTTACAGTGGCAACTCTGTCATTGCCTCTACCATTGGACTCAATATCCCGCCGCTTAGGGTCAATGATATGAACGATGACCCGGAA
AGTGACCTAAGAGGTTGCCTAATCACCGACAAGGATATTGGTGAAGAGGGAGAGGGGTGGCCTTTGAACGTGAAGGACAAAGAAGATGAACCCAACTTGC
TTCAGCAGAATTCTGAACTTTGTTCATGGGAAATTTGCAAGTGCAGTTTATATCTTGCTCCAATATGGTTTATTACAGAGTATTTGTCAAATTCAGCACT
TGCGAATACAAGTGTCGCAAGTACAACAGTCTTGACTTCTACTTCAGGGCTTTTCACCCTTTTATTTGGAGCTGTTCTTGGACAAGAGACTATAAATTTT
GCTAAGGTTGTGGCAGTTTTTATCACTATGGCTGGTGTTGCTATGACCACAGTCGGAAAAACTTGGGCACGGGATGAAGCGTCGAGCTTTTCTGAGACAA
GAAGGCACTCCATCATAGGGGACATTTTTGGTCTTTTCTCAGCAATATCATACAGCTTGTTTACTGTACTACTCAAGAAATGTGCTGGATCAGATGGGAA
TAAGATTGATGTGCAGAAGTGCTTTGGATACATTGGTCTCTTCACGCTTCTTGGCCTTTGGTGGCTTTTGTGGCCACTAAATGCTGCAGGGATCGAACCA
GCATTCAGCTTTCCGCATTCATGGTCTGTTGGCGAAATTGTGCTGTTAAATGGCTTTGTGGGAAGTGTTCTATCTGACTACTTTTGGGCCCTCTCAGTGG
TTTGGACAACACCATTGGTTGCGACGCTAGGCATGTCCTTGACAATACCCCTCGCCATGCTAGCTGACATGGTTATACATGGTCGTCGCTACTCCGCAAT
CTACATATTCGGATGCATTCAGGTTTTTGCAGGATTTATTATAGCCAACATTTCGGATAAATTTTCAGTGAAGAGGGAGTTATTATAG
AA sequence
>Potri.006G266400.2 pacid=42767936 polypeptide=Potri.006G266400.2.p locus=Potri.006G266400 ID=Potri.006G266400.2.v4.1 annot-version=v4.1
MGWKYKAGLGLISTVVIIWVTSAEVTQRIFEMYKQPFAITYLGVSLMVVYLPIALVRDWFCSLFNSGLSMNLYSGNSVIASTIGLNIPPLRVNDMNDDPE
SDLRGCLITDKDIGEEGEGWPLNVKDKEDEPNLLQQNSELCSWEICKCSLYLAPIWFITEYLSNSALANTSVASTTVLTSTSGLFTLLFGAVLGQETINF
AKVVAVFITMAGVAMTTVGKTWARDEASSFSETRRHSIIGDIFGLFSAISYSLFTVLLKKCAGSDGNKIDVQKCFGYIGLFTLLGLWWLLWPLNAAGIEP
AFSFPHSWSVGEIVLLNGFVGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMLADMVIHGRRYSAIYIFGCIQVFAGFIIANISDKFSVKRELL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32140 EamA-like transporter family (... Potri.006G266400
[exp]
0 1
AT3G15180 ARM repeat superfamily protein... Potri.001G396500
[exp]
2.00 0.8044
Potri.010G223733
[exp]
2.82 0.8680
AT1G69450 Early-responsive to dehydratio... Potri.010G164100
[exp]
5.65 0.8181
AT1G20080 SYT2, NTMCTYPE1... synaptotagmin 2, Calcium-depen... Potri.005G241700
[exp]
6.70 0.7978
AT5G54140 ILL3 IAA-leucine-resistant (ILR1)-l... Potri.012G007400
[exp]
9.94 0.8112
AT4G24730 Calcineurin-like metallo-phosp... Potri.012G089300
[exp]
9.94 0.7856 WR3.1
AT5G64740 PRC1, IXR2, E11... PROCUSTE 1, ISOXABEN RESISTANT... Potri.005G027600
[exp]
10.09 0.7920 CESA2.3
AT4G33625 unknown protein Potri.007G115800
[exp]
10.72 0.7648
AT3G23160 Protein of unknown function (D... Potri.008G164700
[exp]
12.68 0.7918
Potri.009G010450
[exp]
18.49 0.7754

Potri.006G266400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.