Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31780 743 / 0 UGT81A1, EMB2797, MGDA, MGD1 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) AT2G11810 505 / 2e-176 ATMGD3, MGDC MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, monogalactosyldiacylglycerol synthase type C (.1.2) AT5G20410 492 / 3e-171 ATMGD2, MGD2 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016600 [exp] 902 / 0 AT4G31780 723 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Potri.006G063300 [exp] 497 / 5e-173 AT5G20410 691 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Potri.018G123000 [exp] 494 / 1e-171 AT5G20410 668 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003418 [exp] 765 / 0 AT4G31780 764 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10026895 [exp] 764 / 0 AT4G31780 758 / 0.0 UDP-glycosyl transferase 81A1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A, EMBRYO DEFECTIVE 2797, monogalactosyl diacylglycerol synthase 1 (.1.2) Lus10008048 [exp] 486 / 1e-168 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1) Lus10016359 [exp] 486 / 1e-168 AT5G20410 686 / 0.0 ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, monogalactosyldiacylglycerol synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF06925 [poplar] [flax] MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase
Representative CDS sequence Show only first row Show all	>Potri.006G266500.1 pacid=42768303 polypeptide=Potri.006G266500.1.p locus=Potri.006G266500 ID=Potri.006G266500.1.v4.1 annot-version=v4.1 ATGCATAACCCTTCAGCAGTAGCCACCAACCAAGAACCAGGCCTTGCCTTTGATTTTTTATCTCAATTGGGTGGCTTTGCTTTTAATAAAGCAGTTCAAA GCATAAATTCAAATGGGTTCTCTTTATCTAAGTCAAACTTTCTGTTTTTTGACAGCCCAATTGGTCAAAAAACGAGAAAGGTTAATGCTTCATTGAGTTT GAGTAGTAGAAGTGGTTTTAAAAGTGTTTGGAGTGAGTTTAACAGGGCTATTAGGTTTCACTGTGAGAGAATCCCTATCGGGTTTGCTTCAGTTCAGGTT GGTTCAGGAGATAATAATGGCAATGATAACATTAGTAGTGATAATGGTAATGGTATCAATGGATTAAGAGATGATGGATGTGGTGTTTTGGTGGATGATG GTGTGCCTTTGAATGGTGTAGAAGGTGTGAGTCCTAAAAGGGTTCTCATTTTAATGAGTGATACTGGTGGTGGTCATAGAGCTTCTGCTGAGGCTATTAA GGCTGCCTTTAATGAAGAATTTGGTGATGATTATCAGGTGTTTGTTACTGATTTATGGTCAGAACATACTCCTTGGCCGTTTAATCAATTGCCCAAAAGC TATAATTTCTTGGTGAAACATGGAGCATTGTGGAAAATGACATATTATGGAAGCGCACCACGTGTGATTCATCAATCTAATTTTGCTGCAACCTCAACAT TTATAGCTCGAGAAGTTGCAAAAGGATTGATGAAATACCAGCCTGACATTATTATCAGTGTGCATCCACTGATGCAACATGTTCCTCTTCGTGTATTGAG GGCAAAGGGTCTTCTGCAGAAGATAATTTTTACCACTGTAGTCACCGATCTAAGCACTTGTCATCCTACATGGTTCCATAAGCTTGTGACAAGATGTTAT TGCCCGTCAACAGATGTATCAAAGAGAGCAATGAAAGCTGGGCTTAAGCCCTCACAGATTAAGGTTTATGGCCTTCCAGTTAGGCCTTCCTTTGTTAAGC CTGTTAGACCAAAGGGTGAATTAAGAAGACAACTAGGCATGGACGAGGATCTTCCAGCTGTGTTATTGATGGGAGGAGGGGAAGGGATGGGCCCAATTGA GGCAACTGCACGAGCACTTGGGGATTCATTATATGATGAGAATCTTGAAGAGCCAATAGGCCAAGTGCTTGTGATATGTGGTCGCAACAAAAAACTCACT AACAGATTACTTTCGATTGATTGGAAGGTTCCAGTCCAGGTGAAGGGTTTTGTCACTAAAATGGAGGAATGCATGGGTGCCTGTGACTGCATTATCACAA AGGCTGGACCAGGGACCATTGCAGAAGCAATGATTCGAGGTCTACCCATAATTTTGAATGATTACATTGCTGGACAAGAAGTAGGTAACGTGCCTTATGT GGTAGAGAATGGATGCGGGAAATTTTCAAAATCACCAAAAGAGATTGCAAAAATAGTTGCTGAATGGTTTGGACCAAAGGCAGATGAACTCAGTGCCATG TCACAAAATGCACTGAAGCTGGCTAGACCTGATGCTGTATTCAAGATTGTCCATGATCTCCACGAGCTGGTTAGACACAGAAATTTTGTACCCCAGTTTT CCTGTGCAACCTGA
AA sequence Show only first row Show all	>Potri.006G266500.1 pacid=42768303 polypeptide=Potri.006G266500.1.p locus=Potri.006G266500 ID=Potri.006G266500.1.v4.1 annot-version=v4.1 MHNPSAVATNQEPGLAFDFLSQLGGFAFNKAVQSINSNGFSLSKSNFLFFDSPIGQKTRKVNASLSLSSRSGFKSVWSEFNRAIRFHCERIPIGFASVQV GSGDNNGNDNISSDNGNGINGLRDDGCGVLVDDGVPLNGVEGVSPKRVLILMSDTGGGHRASAEAIKAAFNEEFGDDYQVFVTDLWSEHTPWPFNQLPKS YNFLVKHGALWKMTYYGSAPRVIHQSNFAATSTFIAREVAKGLMKYQPDIIISVHPLMQHVPLRVLRAKGLLQKIIFTTVVTDLSTCHPTWFHKLVTRCY CPSTDVSKRAMKAGLKPSQIKVYGLPVRPSFVKPVRPKGELRRQLGMDEDLPAVLLMGGGEGMGPIEATARALGDSLYDENLEEPIGQVLVICGRNKKLT NRLLSIDWKVPVQVKGFVTKMEECMGACDCIITKAGPGTIAEAMIRGLPIILNDYIAGQEVGNVPYVVENGCGKFSKSPKEIAKIVAEWFGPKADELSAM SQNALKLARPDAVFKIVHDLHELVRHRNFVPQFSCAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.006G266500 [exp]	0	1
AT3G60810			unknown protein		Potri.002G148400 [exp]	2.44	0.8682
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Potri.001G205400 [exp]	4.47	0.8689
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.010G187800 [exp]	5.09	0.9006	Pt-FAD3.3
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	6.48	0.8574
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	7.74	0.8647	Pt-GT4.1
AT4G28300			Protein of unknown function (D...		Potri.013G131600 [exp]	11.31	0.8570
AT2G15760			Protein of unknown function (D...		Potri.004G143500 [exp]	11.40	0.8624
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	11.61	0.8537
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.014G081700 [exp]	17.88	0.7977
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	20.78	0.8293

Compare expression of checked genes

Potri.006G266500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.