Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24860 167 / 2e-54 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT3G47650 39 / 0.0003 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) AT1G75690 39 / 0.0003 LQY1 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016400 [exp] 213 / 3e-72 AT2G24860 165 / 5e-53 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.005G237800 [exp] 45 / 3e-06 AT1G75690 182 / 8e-60 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G068300 [exp] 41 / 4e-05 AT3G47650 140 / 9e-44 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.018G028500 [exp] 41 / 5e-05 AT3G47650 120 / 4e-36 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.002G023600 [exp] 40 / 0.0001 AT1G75690 193 / 4e-64 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.013G066000 [exp] 40 / 0.0002 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Potri.019G040400 [exp] 39 / 0.0003 AT5G17840 145 / 4e-45 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026899 [exp] 181 / 2e-59 AT2G24860 154 / 6e-49 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10020093 [exp] 66 / 2e-13 AT2G24860 57 / 2e-10 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002906 [exp] 44 / 4e-06 AT3G47650 109 / 1e-31 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10019417 [exp] 41 / 7e-05 AT3G47650 128 / 2e-38 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10002040 [exp] 40 / 0.0001 AT1G75690 203 / 5e-68 LOW QUANTUM YIELD OF PHOTOSYSTEM II 1, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10005719 [exp] 40 / 0.0001 AT3G47650 130 / 4e-40 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1) Lus10030091 [exp] 39 / 0.0003 AT3G47650 129 / 3e-39 DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G266800.1 pacid=42767102 polypeptide=Potri.006G266800.1.p locus=Potri.006G266800 ID=Potri.006G266800.1.v4.1 annot-version=v4.1 ATGAATTCTGTGTGTTCTTGTAGCAGGCCCATGATTGCAGCAGCTAAATCCATGGATATTAACATGAGCTGCTTAAGAAGAGGAGTTGTAATAGTACCTC ATGGTACAAGCAACAGTAGCTCAAGGAGGGTCTGTGGAGTTGTTAGAGCTTCAATGTTGGATTCTTATGAGAGTTCTTCTGATATTGCTAAGAGAATGGA ACAAGCTTGGTTAATCTCTCAGCAACCAAGGCCAGTTTCGTGTACTTCCTGCGATTCAAATGGGCATGTTGAATGCCAGTGGTGTAGGGGTACAGGGTTC TTCATTCTTGGCGATAACATGCTCTGCCAAGTTCCTTCCAGAAATACCACTTGTGTTATTTGTGCTGGAAAGGGGTCAATGCGCTGCTCTGATTGTAAAG GAACTGGCTTTCGTGCCAAGTGGTTGGGGGAGCCTCTGATCTCCAAGTAA
AA sequence Show only first row Show all	>Potri.006G266800.1 pacid=42767102 polypeptide=Potri.006G266800.1.p locus=Potri.006G266800 ID=Potri.006G266800.1.v4.1 annot-version=v4.1 MNSVCSCSRPMIAAAKSMDINMSCLRRGVVIVPHGTSNSSSRRVCGVVRASMLDSYESSSDIAKRMEQAWLISQQPRPVSCTSCDSNGHVECQWCRGTGF FILGDNMLCQVPSRNTTCVICAGKGSMRCSDCKGTGFRAKWLGEPLISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	0	1
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Potri.001G347700 [exp]	1.41	0.8377	PtrcGrx_C2
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.014G060300 [exp]	2.82	0.7917
AT4G32600			RING/U-box superfamily protein...		Potri.018G034400 [exp]	6.16	0.7114
AT4G38800		ATMTN1, ATMTAN1	ARABIDOPSIS METHYLTHIOADENOSIN...		Potri.009G128700 [exp]	8.66	0.7665
AT4G26060			Ribosomal protein L18ae family...		Potri.006G146300 [exp]	9.89	0.7452
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.008G039100 [exp]	10.77	0.7677
AT4G24440			transcription initiation facto...		Potri.005G151700 [exp]	12.24	0.7181
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	13.19	0.7182
AT4G35980			unknown protein		Potri.005G111900 [exp]	13.56	0.7246
AT3G09640		APX1B, APX2	ASCORBATE PEROXIDASE 1B, ascor...		Potri.016G084800 [exp]	13.85	0.7374	APX1.1

Compare expression of checked genes

Potri.006G266800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.