Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02240 216 / 2e-68 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT1G80110 207 / 6e-66 ATPP2-B11 phloem protein 2-B11 (.1) AT5G24560 205 / 3e-65 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02250 206 / 7e-65 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02360 202 / 6e-64 ATPP2-B10 phloem protein 2-B10 (.1) AT2G02340 203 / 9e-64 ATPP2-B8 phloem protein 2-B8 (.1) AT1G09155 193 / 4e-60 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 188 / 4e-58 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 179 / 2e-54 ATPP2-B14 phloem protein 2-B14 (.1) AT2G02230 170 / 2e-50 ATPP2-B1 phloem protein 2-B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G016000 [exp] 410 / 5e-145 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G016100 [exp] 347 / 2e-120 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.006G267000 [exp] 306 / 3e-104 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 304 / 3e-103 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.005G022000 [exp] 238 / 1e-77 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 218 / 6e-70 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.001G050100 [exp] 204 / 1e-64 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.012G120400 [exp] 110 / 3e-28 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.013G012666 [exp] 99 / 4e-25 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042713 [exp] 249 / 1e-81 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10029674 [exp] 244 / 7e-80 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10025666 [exp] 242 / 3e-78 AT5G24560 219 / 5e-69 phloem protein 2-B12 (.1) Lus10018171 [exp] 239 / 2e-77 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10020674 [exp] 215 / 2e-68 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10029872 [exp] 212 / 3e-67 AT1G09155 272 / 3e-91 phloem protein 2-B15 (.1) Lus10015208 [exp] 198 / 5e-62 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031484 [exp] 197 / 6e-61 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10008898 [exp] 194 / 2e-60 AT5G24560 212 / 3e-68 phloem protein 2-B12 (.1) Lus10023207 [exp] 194 / 3e-60 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14299 [poplar] [flax] PP2 Phloem protein 2
Representative CDS sequence Show only first row Show all	>Potri.006G266900.3 pacid=42767940 polypeptide=Potri.006G266900.3.p locus=Potri.006G266900 ID=Potri.006G266900.3.v4.1 annot-version=v4.1 ATGGAAATATCAGAAGAAATGTCTTTGAATGAGCTACCAGAAGGGTGCATAGCTACTGCACTGTCGTTTACAACTCCTCAGGACGTTGGCCGGCTCTCGG TTGTCTCTCCCATGTTCATGTTGGCCGCCGTATCCGATGTTGTTTGGGAGAGGTTCCTTCCTAGAGATCTTGAATCTATTCTATCCACCTCCCCTGATGG TTCTCGCCTGATGGCATCTGCGGCTTCCAAAAAGGAACTGTATTTTAGCCTCTGTGAGAATCCAGTGCTTGTTGGTAATGGGAGAAAGAGCTTTTCATTG GAAAAAAAGAGTGGGAAGAAATGTTACAGGCTTTCTGCAAGGGACCTCTTGATTACATGGGGTGATTCTCCTGAGTATTGGACATGGAATTCTGACCCCA CATCTAGATTTCCAGAAGTAGCTGAGCTTATTTCGGTGTGCTGGCTTGAAATCAGTGGCAAAATCAATACTAGCATGCTATCACCCGCAACGTTGTACAC AGCATACCTTGTGTTAAAGCTTTCCATAGACATTCACAATTATGGATTGGATGACCAGCCAGTTGCGGTTGCAATGAAACTGGATGGAGAAGAAAGTTAT ACACGGACTGTTAGCTGGAGTGCAGAAAGAAGGCGGGGGCAGGTACCCCGTAATGTAAGACGGTCGTTTTCTTTATTTAGCTTTAGCCGCAGTAGATCTG TATCCACTGGAGAAAGTGATGGACATTATCCACAGGAAAGAGGAGATGGGTGGTTGGAGATTGAATTAGGTGAGTTCTTTACCAAGGAAGGGAAAGATGG AGAGCTGGGAATTAGAGTTTTTGATGGCACTACTCATTGGAAACGTGGGCTGATTGTTGAAGGGATCGAGATTAGACCAAAACAGGGTGCAAGAGGAGCT AGTCCAAGCAGTTAA
AA sequence Show only first row Show all	>Potri.006G266900.3 pacid=42767940 polypeptide=Potri.006G266900.3.p locus=Potri.006G266900 ID=Potri.006G266900.3.v4.1 annot-version=v4.1 MEISEEMSLNELPEGCIATALSFTTPQDVGRLSVVSPMFMLAAVSDVVWERFLPRDLESILSTSPDGSRLMASAASKKELYFSLCENPVLVGNGRKSFSL EKKSGKKCYRLSARDLLITWGDSPEYWTWNSDPTSRFPEVAELISVCWLEISGKINTSMLSPATLYTAYLVLKLSIDIHNYGLDDQPVAVAMKLDGEESY TRTVSWSAERRRGQVPRNVRRSFSLFSFSRSRSVSTGESDGHYPQERGDGWLEIELGEFFTKEGKDGELGIRVFDGTTHWKRGLIVEGIEIRPKQGARGA SPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.006G266900 [exp]	0	1
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127300 [exp]	2.64	0.6499
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	11.91	0.6067
					Potri.008G125400 [exp]	28.98	0.5409
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	33.36	0.5624
AT4G31805			WRKY family transcription fact...		Potri.018G019400 [exp]	38.07	0.5195
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	48.37	0.5415
AT5G66270	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G115901 [exp]	48.66	0.5390
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	59.32	0.5299
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Potri.003G168000 [exp]	75.28	0.5056	Pt-G6PD.1
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	96.29	0.5171

Compare expression of checked genes

Potri.006G266900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.