Plant FIBer expression Database

Potri.006G267201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20142 60 / 7e-10 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G023600
[exp]
140 / 3e-37 AT2G20142 86 / 7e-19 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
Potri.001G007501
[exp]
120 / 8e-30 AT2G20142 77 / 2e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
Potri.T044600
[exp]
103 / 2e-23 AT4G27220 192 / 7e-51 NB-ARC domain-containing disease resistance protein (.1)
Potri.018G145558
[exp]
102 / 5e-23 AT4G27220 188 / 1e-49 NB-ARC domain-containing disease resistance protein (.1)
Potri.006G258250
[exp]
55 / 1e-09 ND /
Potri.018G145554
[exp]
48 / 3e-06 AT4G15020 55 / 4e-09 hAT transposon superfamily (.1.2)
Potri.015G125950
[exp]
48 / 9e-06 AT3G58480 91 / 3e-19 calmodulin-binding family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008904
[exp]
72 / 1e-13 ND 38 / 0.007
PFAM info
Representative CDS sequence
>Potri.006G267201.5 pacid=42769437 polypeptide=Potri.006G267201.5.p locus=Potri.006G267201 ID=Potri.006G267201.5.v4.1 annot-version=v4.1
ATGCAAACCTCGGACCACAAGGCTCCTCATGTGCCACCCGATAAAATTGGCTTGGAGGCTCAAAACCAATCTAAAGTGAAAGATGAGCCAAAGTCGGGGC
GATATAAATACAGTGATAAGGGGCCACCATCCAGGCAGACCTCGAACCATAGGGCTCCTCATGTGCTATCCGAAGAAATTGGCTTGGAGGCTCAGAATCG
ATTTGAAGGGAAAGCTGAGCCAAAGTCTAGGCGATATAAATATAGTGCGAGGGGGGCACCACCCAAGCAAACCTCGGACCACAGGGCTCCTCATATACCA
CCCGATAAAATTGGCTTGGAGGCTCAAAACCAATCTGAAGTGAAAGATGAGCCAAAATCGGGGCGATATAGATATAGTGATAAGGGGGCACCATCTAGGC
ACACCTCGGACCACAAGGCTCCTCATGTGTCACCCGATGAAATTGGCTTGGAGACTCAGAACCGATTTGAAATGAAAGTTAAGCCAAAATCGGGGCTATA
TAAATACAGTGCGAGTTGGCCACCCAGGCACACCTCGGACCATAGGACTCCTCATGTCCCACCCGATGAAATTGCATTGGAGCCTCAAAATCGATCTCAA
ATGAAAGTTGAGCTAAAGTCGGGGCGATATAAAGATAGTGATATGGGGGTACCACCGAGGCACACCTCGAACCATAGGGCTCCTCATATGTCACCCGATG
AAATTGACTTGGAGGCTCTGAACCGATGTGAAGTGAAAGTTGAGCCACTAGAAAAAATTGCATTGCAGGTTCAGAACCAATCTGAAGTGAAAGTTGAGCC
AAAGTTGGGGCCATATATATGTAGTGTGGGTTGGCCACCCAGACACACCTCAGACCATAAAACTCCTCGTGTGCCACCCGATGAAATTGCATTGGAGCCT
CAAAACCAATTTGAAGTGAAAATTGAGTCCAAGTTGCAGCTATCTGCTCAAGATCAAATCAATGAGAAAACAAGAGAGTGGGCTTTGTTAATCACCAGCG
TACTTCTAGAGGCCATGTCTGCAGTTTTTGATCAGGTGGGGTACGCGTTGATGGGCATGGTGATATCATTCCTCGCTTTGTTTCTTTCCAGCCTTGATCT
CATTTGTAAGGCACGAAAGGAAGGAGTTCAGAGGAGCCAACCCTTTGGTGGTCTCCTGCAGTATTTTGGACTAGCAGCTGCTGTCTGGCAATGCTTTTAC
TCCACCATAGAGTATCTTTATACTCGAAAGAATCAACAGAATCCAATAAAGATGTGTTTGTTACCTTTTATATTTGCGTTGTGCGTGCTGATTTTTAGGT
TAATCAAGTGTCGCACATGA
AA sequence
>Potri.006G267201.5 pacid=42769437 polypeptide=Potri.006G267201.5.p locus=Potri.006G267201 ID=Potri.006G267201.5.v4.1 annot-version=v4.1
MQTSDHKAPHVPPDKIGLEAQNQSKVKDEPKSGRYKYSDKGPPSRQTSNHRAPHVLSEEIGLEAQNRFEGKAEPKSRRYKYSARGAPPKQTSDHRAPHIP
PDKIGLEAQNQSEVKDEPKSGRYRYSDKGAPSRHTSDHKAPHVSPDEIGLETQNRFEMKVKPKSGLYKYSASWPPRHTSDHRTPHVPPDEIALEPQNRSQ
MKVELKSGRYKDSDMGVPPRHTSNHRAPHMSPDEIDLEALNRCEVKVEPLEKIALQVQNQSEVKVEPKLGPYICSVGWPPRHTSDHKTPRVPPDEIALEP
QNQFEVKIESKLQLSAQDQINEKTREWALLITSVLLEAMSAVFDQVGYALMGMVISFLALFLSSLDLICKARKEGVQRSQPFGGLLQYFGLAAAVWQCFY
STIEYLYTRKNQQNPIKMCLLPFIFALCVLIFRLIKCRT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20142 Toll-Interleukin-Resistance (T... Potri.006G267201
[exp]
0 1
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Potri.007G115200
[exp]
1.41 0.9465 MADS1.5
AT3G60390 HD HAT3 homeobox-leucine zipper protei... Potri.002G136400
[exp]
3.87 0.9212 Pt-ATHB.8
AT5G11290 Plant protein of unknown funct... Potri.003G208400
[exp]
4.24 0.9364
Potri.012G121044
[exp]
6.63 0.9338
AT4G31980 unknown protein Potri.003G208700
[exp]
7.34 0.9163
AT1G10155 ATPP2-A10 phloem protein 2-A10 (.1) Potri.015G120000
[exp]
8.36 0.9111
Potri.009G114701
[exp]
8.77 0.9186
AT4G31980 unknown protein Potri.003G208750
[exp]
9.53 0.9099
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Potri.001G294100
[exp]
9.79 0.9171
AT4G03230 S-locus lectin protein kinase ... Potri.019G119900
[exp]
10.95 0.9042

Potri.006G267201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.