Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24800 409 / 2e-143 Peroxidase superfamily protein (.1) AT4G31760 391 / 3e-136 Peroxidase superfamily protein (.1) AT5G51890 240 / 3e-77 Peroxidase superfamily protein (.1) AT5G66390 232 / 5e-74 Peroxidase superfamily protein (.1) AT4G36430 228 / 2e-72 Peroxidase superfamily protein (.1) AT4G33420 225 / 2e-71 Peroxidase superfamily protein (.1) AT5G64120 224 / 5e-71 Peroxidase superfamily protein (.1) AT2G18980 222 / 4e-70 Peroxidase superfamily protein (.1) AT5G14130 221 / 1e-69 Peroxidase superfamily protein (.1) AT1G05260 219 / 6e-69 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G015500 [exp] 595 / 0 AT2G24800 416 / 2e-146 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 231 / 1e-73 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 226 / 8e-72 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 224 / 4e-71 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 224 / 4e-71 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 223 / 1e-70 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 222 / 3e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 222 / 3e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 222 / 3e-70 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026903 [exp] 435 / 1e-153 AT2G24800 418 / 2e-147 Peroxidase superfamily protein (.1) Lus10020097 [exp] 429 / 2e-151 AT2G24800 412 / 3e-145 Peroxidase superfamily protein (.1) Lus10031664 [exp] 238 / 3e-76 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 237 / 5e-76 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10028736 [exp] 227 / 3e-72 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 227 / 5e-72 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 226 / 7e-72 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 224 / 5e-71 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10032035 [exp] 221 / 1e-69 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10015555 [exp] 219 / 7e-69 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G267400.1 pacid=42768858 polypeptide=Potri.006G267400.1.p locus=Potri.006G267400 ID=Potri.006G267400.1.v4.1 annot-version=v4.1 ATGGCTGTGTGTGTGTGCAGTTTGCCCAAAAAAGCACTAAAAAATCTCCTCATGGAGACAACCTCTGTGCCCTTTTCTGCAAGACCTCATTTGTGTAGCT TTCTGGCTCTTGTTCTCTTATATGTCGTTTCTTCTCCTTGTTTTGCTAGTCTCTTTTTCAACTTTTATGGAGCTTCATGCCCAGCTGCTGAACTTATTGT TTCAAACAAAGTGAGATCAGCTTCCTCTTCTGACCCTACTATACCAGGGAAGCTAGTTCGTTTGGTTTTCCATGACTGCTTTGTAGAGGGTTGTGATGCA TCTGTGCTGCTGCAAGGAAATGGGACAGAGAGAAGCGATCCAGGGAACAGGTCTCTAGGAGGGTTTCAAGTTATTGATTCAGCTAAAAGAAATCTTGAAA TCTTCTGTCCAGGAACTGTTTCTTGTGCTGATGTTGTTGCTTTAGCTGCTAGAGATGCTGTTGCAATTAGTGGTGGACCTCAGCTTCAGATTCCAACTGG TAGGAGGGATGGGAGGGTATCTGCAGCTGCAAATGTGAGACCTAATATCATAGACACAACTTTTACAATGAATGAGATGATTAGCATCTTCACAGCTAAA GGATTATCCCTTGAAGACCTTGTTGTGCTATCAGGAGCTCACACTATAGGATCAGCTCATTGCAGCGCGTTCAGAGATAGGTTCCAAGAGAACTCCAAGG GGAAGCTGACACTCATCGACTCATCTCTCGACAAGAATTATGCGAATGAGCTAACGCAAAGATGTCCAGTGGATGCAAGCGATTCAATAACAGTTGTTAA TGATCCTGAAACATCCTTATCATTTGATAACCAGTACTACAGAAACCTTGTAGCCCACAAAGGCCTTTTCCAATCAGATTCTGTTCTTTTAGATGACAAC AGGACAAGGAATCTAGTAGAAGATTTAGCAAATGATCAAGGAAGGTTCTTTGAGAGTTGGAGCCAGTCATTTCTTAAGCTAACCAGCATTGGAGTAAAAA CAGGTGAGGAAGGGGAAATTCGACAATCTTGTTCAATGACTAATGGATGA
AA sequence Show only first row Show all	>Potri.006G267400.1 pacid=42768858 polypeptide=Potri.006G267400.1.p locus=Potri.006G267400 ID=Potri.006G267400.1.v4.1 annot-version=v4.1 MAVCVCSLPKKALKNLLMETTSVPFSARPHLCSFLALVLLYVVSSPCFASLFFNFYGASCPAAELIVSNKVRSASSSDPTIPGKLVRLVFHDCFVEGCDA SVLLQGNGTERSDPGNRSLGGFQVIDSAKRNLEIFCPGTVSCADVVALAARDAVAISGGPQLQIPTGRRDGRVSAAANVRPNIIDTTFTMNEMISIFTAK GLSLEDLVVLSGAHTIGSAHCSAFRDRFQENSKGKLTLIDSSLDKNYANELTQRCPVDASDSITVVNDPETSLSFDNQYYRNLVAHKGLFQSDSVLLDDN RTRNLVEDLANDQGRFFESWSQSFLKLTSIGVKTGEEGEIRQSCSMTNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24800			Peroxidase superfamily protein...		Potri.006G267400 [exp]	0	1
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.007G043100 [exp]	4.89	0.8806
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	7.07	0.9024
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G227900 [exp]	9.38	0.9020
AT1G04500			CCT motif family protein (.1)		Potri.008G171500 [exp]	15.77	0.8836
AT2G47630			alpha/beta-Hydrolases superfam...		Potri.002G204200 [exp]	17.17	0.8757
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	18.65	0.8751
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	20.83	0.8744
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	23.49	0.8708
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.002G019900 [exp]	26.98	0.8739	Pt-CLV1.1
AT5G66800			unknown protein		Potri.007G042600 [exp]	28.28	0.8449

Compare expression of checked genes

Potri.006G267400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.