Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-COL1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24930 361 / 1e-123 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 282 / 3e-94 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G57660 248 / 7e-80 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT3G02380 231 / 2e-73 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15850 219 / 8e-69 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT5G15840 219 / 1e-68 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT2G21320 86 / 6e-20 CO B-box zinc finger family protein (.1) AT4G38960 85 / 1e-19 CO B-box type zinc finger family protein (.1.2.3) AT2G33500 86 / 2e-18 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G78600 83 / 7e-18 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013800 [exp] 555 / 0 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.006G173600 [exp] 284 / 1e-93 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.018G096084 [exp] 276 / 2e-90 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.004G108320 [exp] 243 / 8e-78 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.017G107500 [exp] 243 / 1e-77 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.014G134601 [exp] 93 / 3e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.004G162600 [exp] 89 / 8e-21 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3) Potri.007G015200 [exp] 89 / 9e-21 AT4G38960 197 / 5e-65 B-box type zinc finger family protein (.1.2.3) Potri.005G117100 [exp] 89 / 9e-21 AT2G21320 192 / 4e-63 B-box zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026909 [exp] 402 / 2e-140 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10020105 [exp] 387 / 3e-134 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10042431 [exp] 186 / 1e-57 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10026238 [exp] 187 / 2e-57 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10015619 [exp] 189 / 2e-56 AT5G57660 210 / 3e-64 CONSTANS-like 5 (.1) Lus10040900 [exp] 96 / 7e-22 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10037636 [exp] 90 / 1e-20 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10031087 [exp] 87 / 5e-20 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 87 / 7e-20 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 85 / 2e-19 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.006G267700.1 pacid=42769096 polypeptide=Potri.006G267700.1.p locus=Potri.006G267700 ID=Potri.006G267700.1.v4.1 annot-version=v4.1 ATGGCATCAAAGCTTTGTGACTCATGCAAATCAGCAACAGCAACGTTGTTTTGTCGAGCTGACTCAGCTTTCCTCTGCGTCAGTTGCGACTCCAAAATCC ACGCGGCCAACAAGCTTGCTTCTCGCCACGCGCGTGTCTGGGTCTGTGAAGTCTGTGAACAAGCCCCAGCTCATGTCACCTGCAAGGCTGACGCTGCCGC TCTATGTGTCACCTGTGACCGTGACATCCACTCGGCAAACCCTCTTGCCCAACGCCACGAACGTGTCCCTGTCACTCCCTTCTTTGACTCTTCCTCCGCT GCGCACGGCGGTGGAGCTGCCGTTAACTTCTTGGAGTATCGTTACCTTGATGACGTGAATGGTGGGGATGATGTTAGTAGGGAGGAGGCAGAGGCGGAGT CGTGGCTGTTACCGAACCCTGGTGGGGGGAATACTAAAGGGGTGGACAGTTTGGATCTGAATACGGGTCAATATGTGTTTGGGGCGGAAATGCACCCGTA TTTGGATTTGGATCGGTATGTGGATCAGAAAGTGGAAGTGGAAGTGCAAGAGCAGAACAGTTCAGGTACTACTGATGGGGTGGTGCCTGTGCAAAGTAAC AAATTAGGGTTTCAAGCTCCTGCTTTGGTGAATGACAATTGCTGCTTTGAGTTGGATTTCTCTGCTGGATCTAAAACTTTTGCTGGTGGCTATGGCTATA ACTCCTTGAGCCACAGTGTTTCTTCTTCATCTCTTGATGTTGGAGTCGTACCAGATGGCAGTACCTTGACAGACATATCGAACCCTTACAGTAGATCAGT GAGCAATGGAATGGAGTCGGCAAACCAGACAGTGCAACTATCAGCAGTTGACCGCGAAGCAAGGGTGTTAAGGTATAGAGAGAAGAGAAAGAATCGAAAA TTCGAGAAGACAATTAGATATGCATCGCGAAAAGCCTATGCCGAAACAAGGCCTCGAATCAAAGGAAGGTTCGCTAAACGTACTGATTCCGGAGTCGAGG TTGATCGGAGTAGTATTTATGGATTCGGCGTTGTTCCATCATTCTAA
AA sequence Show only first row Show all	>Potri.006G267700.1 pacid=42769096 polypeptide=Potri.006G267700.1.p locus=Potri.006G267700 ID=Potri.006G267700.1.v4.1 annot-version=v4.1 MASKLCDSCKSATATLFCRADSAFLCVSCDSKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLAQRHERVPVTPFFDSSSA AHGGGAAVNFLEYRYLDDVNGGDDVSREEAEAESWLLPNPGGGNTKGVDSLDLNTGQYVFGAEMHPYLDLDRYVDQKVEVEVQEQNSSGTTDGVVPVQSN KLGFQAPALVNDNCCFELDFSAGSKTFAGGYGYNSLSHSVSSSSLDVGVVPDGSTLTDISNPYSRSVSNGMESANQTVQLSAVDREARVLRYREKRKNRK FEKTIRYASRKAYAETRPRIKGRFAKRTDSGVEVDRSSIYGFGVVPSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Potri.006G267700 [exp]	0	1	Pt-COL1.1
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	1.73	0.9115
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120280 [exp]	3.74	0.8854
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.010G076700 [exp]	4.00	0.8778
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	5.19	0.8948
AT1G55090			carbon-nitrogen hydrolase fami...		Potri.001G087400 [exp]	5.91	0.8421
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	6.00	0.8882
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	6.48	0.9039	Pt-ANL2.1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	7.21	0.8685	Pt-SPP1.1
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Potri.013G087000 [exp]	8.00	0.8648	PIN9.2
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	8.66	0.8877

Compare expression of checked genes

Potri.006G267700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.