Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10730 431 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G15910 269 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32220 192 / 1e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G28840 41 / 0.0008 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G013400 [exp] 507 / 0 AT5G10730 422 / 2e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G106300 [exp] 354 / 2e-123 AT5G10730 360 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G136900 [exp] 195 / 7e-61 AT1G32220 328 / 8e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020108 [exp] 422 / 3e-150 AT5G10730 427 / 5e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035719 [exp] 283 / 2e-95 AT5G10730 271 / 9e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010419 [exp] 196 / 2e-60 AT1G32220 397 / 5e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037306 [exp] 142 / 5e-41 AT5G10730 151 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012126 [exp] 109 / 2e-29 AT1G32220 241 / 3e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10000057 [exp] 85 / 4e-20 AT1G32220 201 / 1e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012127 [exp] 74 / 1e-15 AT1G32220 106 / 3e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013202 [exp] 44 / 8e-05 AT2G33630 714 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030720 [exp] 44 / 0.0001 AT2G33630 720 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001777 [exp] 43 / 0.0001 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.006G268000.1 pacid=42770498 polypeptide=Potri.006G268000.1.p locus=Potri.006G268000 ID=Potri.006G268000.1.v4.1 annot-version=v4.1 ATGACTTCTCTTACTTCACGTTTGATCCATTCAAGAACTTCACTCTCCAAATTATATACAATGGCTGTATCAAGTAATGGGAGATATTTATCTACTGATT CGAATAAGGTTGATGAACCCTTTAAAGTTGAGGAGGCTGAGACATTGAATGTACCTCCACCACCAACAGAGAAGTTGCTTGTATTGGGTGGAAATGGATT TGTTGGCTCTCACATCTGCAAAGAAGCTGTAGACCGTGGCTTAACAGTTGCTAGCCTCAGCAGGTCTGGTAGGCCATCGATACAGGAATCATGGGTTAAC AACGTGATTTGGCATCAAGGAAACCTACTATCATCTGATTCGTGGATGCAAGCCTTAAATGGGGTCACCTCTGTTATTTCTTGTGTTGGTGGTTTTGGCT CGCAATCTTATATGTATAAGATTAATGGAACTGCAAATATAAATGCAATTAGAGCTGCTTCAGAAAAAGGTGTAAAAAGATTTGTTTATATCTCTGCTGC TGACTTTGGCTTGGTCAATTACTTGCTGCAAGGTTATTATGAGGGAAAGAAGGCTGCTGAAACAGAGTTGTTGACCAAGTTTGCATATGGAGGAGTGGTT CTCCGGCCTGGGTTTATTTATGGAACTCGCAATGTTGGAAGTGTGAAGTTACCTCTTGGTGTAATCGGTTCTCCACTAGAGATGGTTCTCCAACATGCAA AACCACTTAAACAGCTTCCCCTGGTTGGACCCTTGTTCACTCCCCCTGTCAGTGTTACTGCCGTGGTGAAGGTTGCAGTAAGGGCAGCAACTGATCCAGT TTTCCCTCCCGGCATCGTGGATGTTTATGGAATCCTGCGTTATAGCCAACAGCAAAGAGCAACATAG
AA sequence Show only first row Show all	>Potri.006G268000.1 pacid=42770498 polypeptide=Potri.006G268000.1.p locus=Potri.006G268000 ID=Potri.006G268000.1.v4.1 annot-version=v4.1 MTSLTSRLIHSRTSLSKLYTMAVSSNGRYLSTDSNKVDEPFKVEEAETLNVPPPPTEKLLVLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIQESWVN NVIWHQGNLLSSDSWMQALNGVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLVNYLLQGYYEGKKAAETELLTKFAYGGVV LRPGFIYGTRNVGSVKLPLGVIGSPLEMVLQHAKPLKQLPLVGPLFTPPVSVTAVVKVAVRAATDPVFPPGIVDVYGILRYSQQQRAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	0	1
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Potri.007G072700 [exp]	4.00	0.7960
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	4.00	0.8347	Pt-ATPDAT.2
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.014G151200 [exp]	5.83	0.8522	TXR1.1
AT1G22840		CYTC-1, ATCYTC-...	CYTOCHROME C-A, CYTOCHROME C-1...		Potri.019G076001 [exp]	13.49	0.7646
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Potri.015G132300 [exp]	14.42	0.7863	PBS2.1
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	16.73	0.7954	Pt-LEN1.1
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126600 [exp]	18.24	0.7823
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	18.76	0.7426
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.018G072700 [exp]	21.35	0.7176
AT2G35900			unknown protein		Potri.016G066800 [exp]	23.21	0.7242

Compare expression of checked genes

Potri.006G268000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.