Plant FIBer expression Database

Potri.006G270200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22160 77 / 9e-19 unknown protein
AT3G54390 45 / 5e-06 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G011400
[exp]
239 / 3e-82 AT4G22160 77 / 1e-18 unknown protein
Potri.004G004100
[exp]
199 / 2e-66 AT4G22160 77 / 2e-18 unknown protein
Potri.001G028400
[exp]
44 / 1e-05 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1)
Potri.003G195300
[exp]
43 / 3e-05 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G270200.1 pacid=42768473 polypeptide=Potri.006G270200.1.p locus=Potri.006G270200 ID=Potri.006G270200.1.v4.1 annot-version=v4.1
ATGGCAGACGCAGCCGATCGAGCCAGACCGAACCGGGAAGAGGAGAACCGTTTAAAGCATGCCTGTGATGCTGGAATGGTGACTGGTGAAGTCCCTTCGG
ACAGCGAGGATTCTAATAATCCACTGAGTTCTGACTCTGTGAGCTCCGAGTCACCTCCAAGACTTGCTGATCTTGCAGCGAGTTTCCGGGTCTTCTCGGA
GTCAATGGCGAGAATGGACCTTGCAGAGATGGAGATGATCAAGGCAAGAGAGGCTTCAAGGTTGGAGGCAGAGAAAAGGAGGATGGAGTTGGAGGCTGAG
TTGACTAGAATGATGTTGCAGACTCAGTTGCAGATTGCTTCGATTGTGGCCGGGAAAGGAACGAGTAGAAAGAGGAAACGAGTTGGAGAAGAAGAGGGGG
AGCTGCCCATTTTGTCAAGGGAAGGAGCTTTGCTGCTAAGTTTGCTACAGTGCAACTTCTTCTTTTGA
AA sequence
>Potri.006G270200.1 pacid=42768473 polypeptide=Potri.006G270200.1.p locus=Potri.006G270200 ID=Potri.006G270200.1.v4.1 annot-version=v4.1
MADAADRARPNREEENRLKHACDAGMVTGEVPSDSEDSNNPLSSDSVSSESPPRLADLAASFRVFSESMARMDLAEMEMIKAREASRLEAEKRRMELEAE
LTRMMLQTQLQIASIVAGKGTSRKRKRVGEEEGELPILSREGALLLSLLQCNFFF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22160 unknown protein Potri.006G270200
[exp]
0 1
AT4G22160 unknown protein Potri.011G011400
[exp]
1.00 0.9858
AT5G63010 Transducin/WD40 repeat-like su... Potri.012G087300
[exp]
9.05 0.6930
AT3G12600 ATNUDT16 nudix hydrolase homolog 16 (.1... Potri.003G194900
[exp]
14.69 0.7289
AT3G49010 RSU2, ATBBC1 40S RIBOSOMAL PROTEIN, breast ... Potri.013G027600
[exp]
17.54 0.8196 ATBBC1.1
AT5G65360 Histone superfamily protein (.... Potri.002G028800
[exp]
18.16 0.7874
AT1G67430 Ribosomal protein L22p/L17e fa... Potri.010G060400
[exp]
20.00 0.7841
AT1G53380 Plant protein of unknown funct... Potri.001G387700
[exp]
20.73 0.7674
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.013G128600
[exp]
26.68 0.7649
AT4G27450 Aluminium induced protein with... Potri.001G403000
[exp]
29.12 0.7449
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.003G043700
[exp]
29.17 0.7193

Potri.006G270200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.