Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10720 726 / 0 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT1G27320 161 / 3e-40 AHK3 histidine kinase 3 (.1) AT5G10680 140 / 4e-37 calmodulin-binding protein-related (.1) AT5G35750 145 / 4e-35 AHK2 histidine kinase 2 (.1) AT2G01830 144 / 1e-34 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 117 / 2e-26 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 96 / 7e-20 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G47430 94 / 4e-19 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G40940 92 / 8e-19 ERS1 ethylene response sensor 1 (.1) AT5G26594 62 / 5e-11 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G011400 [exp] 1782 / 0 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.014G164700 [exp] 167 / 4e-42 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.010G102900 [exp] 153 / 1e-37 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 150 / 1e-36 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 108 / 1e-23 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.005G111700 [exp] 108 / 1e-23 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.001G057400 [exp] 106 / 4e-23 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.007G056400 [exp] 104 / 2e-22 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.001G204200 [exp] 99 / 4e-21 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026917 [exp] 1329 / 0 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020115 [exp] 1077 / 0 AT5G10720 853 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020114 [exp] 191 / 2e-56 AT5G10720 177 / 2e-52 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10012325 [exp] 163 / 1e-40 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10030772 [exp] 155 / 2e-38 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 155 / 3e-38 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 153 / 2e-37 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10006370 [exp] 152 / 4e-37 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10003686 [exp] 151 / 6e-37 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 142 / 2e-34 AT1G27320 1094 / 0.0 histidine kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.006G270500.1 pacid=42770527 polypeptide=Potri.006G270500.1.p locus=Potri.006G270500 ID=Potri.006G270500.1.v4.1 annot-version=v4.1 ATGGTCTGCGAAATGGAGAATGATCAAATGGAGGACATGGACATTGAAGCCCTCTCTTCAATGTGGCCTGAAGATATTGATAGCTCAAAGCCATATGTAG AGAAGCCGGTAGGGGATCAAGACATGTTAGAGGAGGTTACCATAGTTGAGGGGCCAACTATAGTTGATTTCCATCATCTTGTCGAGCTGACGAATTACAC TGATAGGGGCTCTTCTCAGTTGGCACATCTTGTACAACACTGGGAGTATAAACAGGCAAATGCAGTCCGCCTTCTCAGAGAAGAGCTTGACATCTTAAAC AAACAAAGAGAGGAAGTTGAGCTCAAGAAATTGGAGATATTGGAGGATTTTCGGTTTGAGGAAGAAAGATACAGTGGTGATAAACGACAGATTTCTATTT TGGATGAAATATTTGATATATATCAAGATATTCCTCGGAGAAAAAGTGATATCATTGTTCAAAGCAAGAGAGTAGACATAGATGCCGAATTCGACACTGT CGCATACTGGAAACAGCGAGTAGTGCATTTAGAGAAATTGTTGGAGGCCAGTGTACACAGAGAGGAGTTACTGACAGAGAAGTTACAAGAAAGCATACAG AACTTGGAAAAGCAATCCTCCCCAGTTGAAGAGTTGACACAGATTCTGAAAAGGGCTGATAATTTCTTACATTTTGTACTTCAAAATGCTCCTGTTGTTA TAGGCCATCAGGATAAAGATTTAAGATATCGCTTTATCTATAATCATTTTCCGCGTTTGCAAGAGGAGGAAATTATAGGAAAAACAGATGTCGAAATTTT TTCAGGCGCAGGAGTTAAGGAATCTCAAGATTTCAAGAAAGAAGTTTTGGATAAAGGATTGCCTGCAAAGAGGGAAATCACATTTGAGACAGAATTATTT GGTTCAAAGACATTTTTGATCTATGTGGAACCTGTTTTTAGCAAGTCCGGGGAGACAATCGGTATAAACTATATGGGAATGGATGTAACTGATCAGGTAA GGAAAAGAGAGAAAATGGCAAGGCTTCGAGAAGAGATAGCAGTACAGAAAGCTAAGGAAACAGAACTTAACAAAACAATCCATATAACAGAGGAAACAAT GCGTGCAAAACAAATGCTAGCAACCATGTCTCATGAAATAAGATCACCTCTCTCTGGAGTTGTTAGCATGGCTGAGATTCTCTCCACCACAAACCTTGAT CGCGAGCAAAGACAACTATTGAATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTCGACCTTTCCAAGGTTGAATCAGGTG TTATGAAGTTGGAGGCTACGAAATTCCGACCACGAGAGGTAGTAAAACATGTGCTGCAGACTGCTGCGGCATCATTGCAAAAGATTCTGACCTTGGAAGG ACGTGTAGCCGATGATGTTCCCATTGAGGTCATTGGAGATGTTCTTAGGATCCGGCAAATCCTCACCAACTTGATAAGCAATGCAATCAAGTTTACTCAT GAAGGGAAAGTAGGGATAAAACTTTATGTCGTATCGGATCCATGTTATGGAAAAGCTGAAAGAAAACATCAGAAGTCATCTGCAGATCAGTCAACCACAA ATGAGCCAAAGGAAGGCAAGCCTACATCCTCGTCTCAAAGTAGCAGCGATCGAAAAAGTTTCCACAGTACAAAATACAGTGAAGGTCCATATCCTAATCA TTTGCCTAGCAATGAACCTCAAACACCGGTTAAGAATGGAAACACAATGGACGGAGATAAAGGGGAGGAACCTGAAGTACCTGGAACAACAGTGTGGCTT TGCTGTGATGTTTATGACACCGGCATTGGAATCCCAGATAATGCTTTACCTACTCTATTCAAAAAATACATGCAAGTTAGTGCGGATCATGCTCGAAAAT ATGGCGGGACAGGGCTAGGCCTTGCGATATGCAAACAGCTGGTTGAGCTGATGGGAGGCCGTCTCACTGTGTCTAGCAAAGTGAAATGTGGATCTACGTT TACGTTTGTGCTCCCGTATAAGGTATCATCAACCTGTGATTCTTCCGATGATCCTGATGATCTTTCAGAGATGGCTGATCATGATGCTCCACTAGAGGAT GAAACTGCTGGCTTCTTTCAGTTCCAACCACGTACTTTGGGCTCTCTATTCTCTTCTAATGGATCCACCAGGACTCAAAAACTGTTGCCACATAGTATTG GTTTCAGTAATTCCCCTATACTCAATGGATTCTCTGAGGATTCTTGCTCATTCCCTTCTGGTAACGTTAGATTGAAAGAGACAACTTCTGTTGAGGATGC CTGTTCTATGGTTGAAGTTGCCGAGACATTATCTGAACCTGAAAGCTCATTTAGTCATAGTCCAGACCGTGACAACGAGAATGTAGTTTGTAGAAGAAAA CGATGTCCAGATGAAACAAAGAGTAAAATCCCTAATGGTACTAAAAACTGCAATAATCACAAAGAAGTGTCAGGTGACCCACCAGGGTCGTGTCAGGCAC AAGAGAAATCTGCCACAAGTTCTCAGTGCACTTCTAGCAGCATTCCACAAGAACCAGAATCAAAACCAAAGCCTAAGATCCTTCTAGTAGAAGATAACAA GATCAACGTAATGGTGACGAAATCAATGATGAAGCAGTTAGGCCACACCATGGATGTCGTAAATAACGGAGTTGAAGCAGTGCGTGCAGTTCAGTCCTAT TCTTATGATCTCATTTTGATGGATGTCTGCATGCCTGTTATGAATGGTCTTCAAGCTACACAATTGATTCGTTCTTTCGAAGAAACTGGCAATTGGGATG CTGCTATTAAGGCTGGAATAGAGCCATGTGCACCATCTTCAGCTTCAGTACTAGATGGTCAGAGTTCAATTCATGATCACAAGCGGATTCCTATAATTGC AATGACAGCAAATGCATTATCAGAGAGTGCAGAGGAATGCTATGCAAATGGCATGGACTCATTTGTTTCAAAGCCCGTGACTTTTCAAAAAATAAAAGAG TGCTTGGAACAATATCTACCATGA
AA sequence Show only first row Show all	>Potri.006G270500.1 pacid=42770527 polypeptide=Potri.006G270500.1.p locus=Potri.006G270500 ID=Potri.006G270500.1.v4.1 annot-version=v4.1 MVCEMENDQMEDMDIEALSSMWPEDIDSSKPYVEKPVGDQDMLEEVTIVEGPTIVDFHHLVELTNYTDRGSSQLAHLVQHWEYKQANAVRLLREELDILN KQREEVELKKLEILEDFRFEEERYSGDKRQISILDEIFDIYQDIPRRKSDIIVQSKRVDIDAEFDTVAYWKQRVVHLEKLLEASVHREELLTEKLQESIQ NLEKQSSPVEELTQILKRADNFLHFVLQNAPVVIGHQDKDLRYRFIYNHFPRLQEEEIIGKTDVEIFSGAGVKESQDFKKEVLDKGLPAKREITFETELF GSKTFLIYVEPVFSKSGETIGINYMGMDVTDQVRKREKMARLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTNLD REQRQLLNVMISSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGRVADDVPIEVIGDVLRIRQILTNLISNAIKFTH EGKVGIKLYVVSDPCYGKAERKHQKSSADQSTTNEPKEGKPTSSSQSSSDRKSFHSTKYSEGPYPNHLPSNEPQTPVKNGNTMDGDKGEEPEVPGTTVWL CCDVYDTGIGIPDNALPTLFKKYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKVKCGSTFTFVLPYKVSSTCDSSDDPDDLSEMADHDAPLED ETAGFFQFQPRTLGSLFSSNGSTRTQKLLPHSIGFSNSPILNGFSEDSCSFPSGNVRLKETTSVEDACSMVEVAETLSEPESSFSHSPDRDNENVVCRRK RCPDETKSKIPNGTKNCNNHKEVSGDPPGSCQAQEKSATSSQCTSSSIPQEPESKPKPKILLVEDNKINVMVTKSMMKQLGHTMDVVNNGVEAVRAVQSY SYDLILMDVCMPVMNGLQATQLIRSFEETGNWDAAIKAGIEPCAPSSASVLDGQSSIHDHKRIPIIAMTANALSESAEECYANGMDSFVSKPVTFQKIKE CLEQYLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Potri.006G270500 [exp]	0	1
AT5G47780		GAUT4	galacturonosyltransferase 4 (....		Potri.006G001100 [exp]	2.44	0.7973
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	2.44	0.8045
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	4.24	0.7740
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	6.70	0.7190
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	20.37	0.7829	KO,GA3.1
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Potri.001G166400 [exp]	25.69	0.7063
AT1G22500		AtATL15	Arabidopsis thaliana Arabidops...		Potri.005G160900 [exp]	26.75	0.7861
AT1G44970			Peroxidase superfamily protein...		Potri.002G031200 [exp]	62.35	0.7179
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.003G097100 [exp]	68.60	0.6544
AT5G55860			Plant protein of unknown funct...		Potri.001G369200 [exp]	75.49	0.7099

Compare expression of checked genes

Potri.006G270500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.