Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24640 698 / 0 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G31670 691 / 0 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 407 / 5e-131 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G65450 362 / 2e-115 UBP17 ubiquitin-specific protease 17 (.1) AT4G24560 353 / 2e-109 UBP16 ubiquitin-specific protease 16 (.1) AT5G57990 230 / 3e-65 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 214 / 1e-60 UBP25 ubiquitin-specific protease 25 (.1) AT5G46740 177 / 3e-47 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 160 / 1e-41 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 134 / 4e-34 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009500 [exp] 1100 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 400 / 3e-129 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 399 / 8e-128 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 402 / 2e-127 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 399 / 8e-126 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.018G107500 [exp] 243 / 2e-69 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 240 / 2e-68 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.003G092400 [exp] 211 / 1e-58 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G394600 [exp] 207 / 2e-58 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026918 [exp] 784 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 769 / 0 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 410 / 7e-131 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10035825 [exp] 248 / 2e-71 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 246 / 1e-70 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10015893 [exp] 226 / 6e-68 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10013726 [exp] 213 / 2e-60 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 212 / 5e-60 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10043126 [exp] 203 / 7e-56 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 205 / 1e-55 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G270600.2 pacid=42770581 polypeptide=Potri.006G270600.2.p locus=Potri.006G270600 ID=Potri.006G270600.2.v4.1 annot-version=v4.1 ATGCATGTCGGTGGAATAACAGTGGATCTGAATTGGTTACTACAATTTATATTCACTGTTTTTGTAATTGGTTTGGGGTTGTTACACCTCGTTAAGAATA CGGCGTCCAAGTATTTCGAAGTCGGCGCTAATTTCGAAGCAGCTGAGAGTAGCCACACTGCTATTGATCCAAATATTATTAATCAAGCCGTGGAAGCTGA AGAGGACTCTAGTATCTGTGGAAATTGTGGCGGTTTCGGGACTAAAAAGTGTTCTCGTTGCAAATCCGTGAGATATTGCTCACAGAGATGCCAAGAAGCA GACTGGAAGGCTGGCCATAAGTTAAAATGCAAGGATTTCAAATTAAATTCTTCACAAACAGTAAGATCAAACTTTGGTTTTAAACCTTCAGGTGGTGGGA GTAGAAGCTTTTCTAACGCTGCACTTGTTCCTGCCAATGGGGTTTCTAACTCCAAGCCTATAAAGAAGCCAGGAAAGGTTCTTTTCCCGTATGATGAGTT CATTAAACTTTACAACTCAGACAAGCCCGAATTCTCTCCCTGTGGGCTCTTAAATTGTGGAAACAGTTGCTTTGCCAACGTGGTTTTACAATGCCTCACA TACACAAGGCCACTTGTTGCATATTTGTTGAAGAAAGGTCATCAAACAGAATGTAGACATAATGATTGGTGTTTTCTTTGTGAATTCCAATCCCATGTTG AAAGAGCAAGCCAAAGCACGCTTCCCTTTTCACCAATAAATATTATTTCTCGGTTACCTAATATTGGTGGTAATCTTGGCTATGGAAGACAGGAGGATGC TCATGAGTTCATGAGGCTTGCTATTGATACTATGCAATCAGTATGCCTTGATGAATTTGGTGGAGAAAAGGCTGTTGAACCTGCCTCTCAAGAGACTACA ATAATTCAACACATATTTGGGGGTCGCCTCCAATCTCAGGTGATATGCACAAAATGCAATAAGATTTCAAATCAGTTTGAGAACATGATGGATTTAACTG TTGAGATTCATGGTGATGCTGCATCCTTGGAGGAATGCCTCGATCAATTCACAGACAAAGAGTGGCTTCATGGAGAAAATATGTACAAATGTGACAGGTG CAATGACTATGTCAAGGCATGGAAGCGTCTTACCATTCAACGAGCTCCAAATGTTCTTACAATCGCTTTAAAGAGATTCCAGAGTGGGAGGTTTGGTAAA CTTAACAAAAGGGTAACTTTTCCTGAGATGTTAGATCTGAGCCCCTACATGAGTGAAGGAGGAGATGGCACTGATGTGTACAAGCTTTATGCAGTTGTTG TCCATGTGGATATGCTAAATGCATCATTTTTTGGTCATTACATCTGCTACACCAAGGATTTCCATGGAAACTGGCACAGAATTGATGACTGCAAGGTTTC TAGTGTTGAATTAGACGAGGTACTTTCTCAGGGCGCATATATGCTTGTGTACAGCAGGGTTTCTGTTCGACCATCATGTCTCAGAACCATTGAGCCTTCA AAGGAGCAGCAATCAATCGTGAAAGTAGAACTAGATTCTTGCACAGAGAACCCAGTTGAACACCTTTCACCAATAGAGTCGATGGATGCCACAAATTCTG GGTTCCCAGCACCTGAAAATGTAAATTCTGAAGTTGGAAGTGAACATCCCGAGTCAGGGACTGGTAATGAAGATCATGACGATATGATTGGAGTTGATTA CTGCTCAAGTTTATCCATTCCAGTGGAGGTTTCTGGCCTCAAGAAGGATTCCGCTGCTGCACTTGATTCAGAAGCTGTTGTGATAGAGCACTCCTTGGAC TATACAGATACAGTCATGTCTGAATCAGATTCTGCCGTTGCGAAGGATATCCAAGTAAATGGCAGTATTTATTCATTCTCGAGTGAAGAGATTTCAACAT AA
AA sequence Show only first row Show all	>Potri.006G270600.2 pacid=42770581 polypeptide=Potri.006G270600.2.p locus=Potri.006G270600 ID=Potri.006G270600.2.v4.1 annot-version=v4.1 MHVGGITVDLNWLLQFIFTVFVIGLGLLHLVKNTASKYFEVGANFEAAESSHTAIDPNIINQAVEAEEDSSICGNCGGFGTKKCSRCKSVRYCSQRCQEA DWKAGHKLKCKDFKLNSSQTVRSNFGFKPSGGGSRSFSNAALVPANGVSNSKPIKKPGKVLFPYDEFIKLYNSDKPEFSPCGLLNCGNSCFANVVLQCLT YTRPLVAYLLKKGHQTECRHNDWCFLCEFQSHVERASQSTLPFSPINIISRLPNIGGNLGYGRQEDAHEFMRLAIDTMQSVCLDEFGGEKAVEPASQETT IIQHIFGGRLQSQVICTKCNKISNQFENMMDLTVEIHGDAASLEECLDQFTDKEWLHGENMYKCDRCNDYVKAWKRLTIQRAPNVLTIALKRFQSGRFGK LNKRVTFPEMLDLSPYMSEGGDGTDVYKLYAVVVHVDMLNASFFGHYICYTKDFHGNWHRIDDCKVSSVELDEVLSQGAYMLVYSRVSVRPSCLRTIEPS KEQQSIVKVELDSCTENPVEHLSPIESMDATNSGFPAPENVNSEVGSEHPESGTGNEDHDDMIGVDYCSSLSIPVEVSGLKKDSAAALDSEAVVIEHSLD YTDTVMSESDSAVAKDIQVNGSIYSFSSEEIST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.006G270600 [exp]	0	1
AT4G10790			UBX domain-containing protein ...		Potri.003G145200 [exp]	6.70	0.7415
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.014G034100 [exp]	9.00	0.7577
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.018G064500 [exp]	9.64	0.7428
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Potri.008G189700 [exp]	10.95	0.6954
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.010G006300 [exp]	11.74	0.7322
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	14.83	0.7088
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	16.55	0.7458
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.006G083600 [exp]	34.87	0.6916
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.003G020800 [exp]	37.52	0.6354
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	38.30	0.7198

Compare expression of checked genes

Potri.006G270600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.