Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATCSLC05.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31590 1085 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 1048 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT4G07960 847 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT3G28180 845 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT3G07330 769 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT5G22740 394 / 1e-129 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT5G03760 389 / 1e-127 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 377 / 5e-123 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT1G24070 377 / 5e-123 ATCSLA10 CELLULOSE SYNTHASE LIKE A10, cellulose synthase-like A10 (.1) AT2G35650 374 / 2e-121 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009300 [exp] 1239 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.005G146900 [exp] 849 / 0 AT4G07960 1050 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G114200 [exp] 844 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.002G248400 [exp] 768 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 708 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 400 / 6e-132 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.009G149700 [exp] 394 / 7e-130 AT5G22740 910 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) Potri.014G190701 [exp] 382 / 2e-129 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.004G189000 [exp] 389 / 7e-128 AT5G22740 927 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026923 [exp] 1089 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10020120 [exp] 1019 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039440 [exp] 874 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10039475 [exp] 873 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10007715 [exp] 776 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10025886 [exp] 769 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10018651 [exp] 761 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10038217 [exp] 689 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 391 / 1e-128 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 375 / 3e-122 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.006G270900.1 pacid=42769705 polypeptide=Potri.006G270900.1.p locus=Potri.006G270900 ID=Potri.006G270900.1.v4.1 annot-version=v4.1 ATGGCTCCAAGATTGGATTTTTCAGATTGGTGGGGAAAAGATAGCAAGGAGGGAACACCTGTTGTAGTGAAAATGGAGAATCCTAACTATTCTGTCGTGG AAATCAATGGTCCAGATTCTGCATTTAGGCCAGTTGAGAAGAGTAGAGGCAAGAATGCAAAGCAAGTCACATGGGTTTTGCTCCTCAAGGCTCATAGAGC TGTTGGTTGTGTTGCTTGGTTAGCTACTGTCTTTTGGGCCTTGCTAGGGACTATAAAGAAGAGGTTGATCTTTAGACAAGGTGTTGCTGTGGCTACTGAG AAGTTAGGCAAAGGGAAAATGGTACTTAAAATCATTAGAGTATTTTTGGTTGCTTCTTTGGCAATTTTGGCTTTTGAAGTGGTTGCCTATCTGAAAGGTT GGCGTTATTTTGAGAGTGCTAATTTGCATATCCCAAGGACCTTGGATTTGCAAGGCTGGCTTCATGTGGTTTATGTTGCTTGGTTAACATTCAGGGCTGA TTACATTGCGCCCTTAATTCAAGCTCTCTCTCAATTCTGTGTTGTTTTGTTCCTTATTCAATCTGTAGATCGTTTGATACTTTGTTTGGGTTGCTTTTGG ATTAAATACAAGAAGATTAAGCCAAGGATTGAAGTGGATCCATTCAAGTCAGATGATGTTGAGGCATCAGGCTACGAGTATCCCATGGTTCTTGTTCAAA TCCCAATGTGTAATGAAAGAGAGGTGTATGAGCAGTCTATCTCTGCAGTTTGCCAAATGGATTGGCCAAAGGATCGAATACTGATTCAAGTTCTTGATGA TTCTAATGATGAGAGCATCCAATGGTTAATCAAGGCAGAGGTTGCTAAGTGGAACCAAAAGGGTGTCAACATAATCTATAGGCATCGTTTGATTAGAACT GGTTACAAGGCTGGAAATCTCAAGTCTGCAATGGGCTGCGATTATGTAAAGGATTATGAGTTTGTTACAATTTTTGATGCTGATTTCCAGCCTAATCCAG ACTTCCTTAAGCTGACAGTGCCGCATTTCAAGGGAAATCCTGAACTGGGGTTGGTTCAGGCAAGATGGGCATTTGTGAACAAGGATGAGAATTTGTTGAC TCGTCTCCAAAACATTAATTTGTGTTTTCACTTTGAGGTGGAACAGCAAGTTAATGGAACATTCCTAAATTTCTTTGGTTTCAATGGAACTGCTGGTGTT TGGAGAATCAAAGCCCTTGAAGAGTCTGGTGGATGGCTTGAAAGGACAACTGTAGAGGACATGGACATAGCTGTCCGTGCACATCTGAATGGTTGGAAAT TCATCTTCCTTAATGATGTGAAGGTCCTCTGTGAAGTTCCCGAGTCCTATGAAGCTTACAGGAAGCAGCAACATCGTTGGCATTCCGGTCCAATGCAACT TTTCCGCTTGTGTCTGCCAGCAATTATAACCTCTAAGATGGCATTTTGGAAGAAAGCAAACTTAATATTCCTATTCTTTCTATTGAGAAAACTTATCCTT CCTTTCTATTCCTTCACACTGTTCTGCATAATTCTTCCTTTAACAATGTTTGTCCCTGAGGCTGAGCTTCCTATGTGGGTTATTTGCTATGTGCCTGTCT TGATGTCATTCCTCAACATTCTTCCTACCCCAAAATCCATCCCTTTTATTGTTCCTTACCTTCTCTTTGAAAACACCATGTCAGTTACCAAATTCAACGC CATGGTATCTGGTTTATTCCAGTTGGGTAGCTCATACGAGTGGGTTGTCACCAAGAAGGCTGGTAGGTCATCAGAATCTGACTTACTGGCTGCTGCTGAG AGGGACTCAAAGACAATGAACCAAGCCCAGATATGCAGAGGAGCTTCTGAGACCGAGCTTGAACTGTTAAACCAATTAAAGGAACAAAAAGAAGCAAATC CTACACCTGTTAAGAAAGTGAATAAGATATACAGGAAGGAGCTCGCTCTAGCATTCCTCCTACTCACAGCTTCTGTCAGGAGCTTGTTATCGGCCCAGGG AGTCCACTTTTACTTCCTTCTCTTCCAAGGTGTGACTTTCCTTGTCGTTGGTCTTGATCTGATTGGAGAGCAAATAAGCTAA
AA sequence Show only first row Show all	>Potri.006G270900.1 pacid=42769705 polypeptide=Potri.006G270900.1.p locus=Potri.006G270900 ID=Potri.006G270900.1.v4.1 annot-version=v4.1 MAPRLDFSDWWGKDSKEGTPVVVKMENPNYSVVEINGPDSAFRPVEKSRGKNAKQVTWVLLLKAHRAVGCVAWLATVFWALLGTIKKRLIFRQGVAVATE KLGKGKMVLKIIRVFLVASLAILAFEVVAYLKGWRYFESANLHIPRTLDLQGWLHVVYVAWLTFRADYIAPLIQALSQFCVVLFLIQSVDRLILCLGCFW IKYKKIKPRIEVDPFKSDDVEASGYEYPMVLVQIPMCNEREVYEQSISAVCQMDWPKDRILIQVLDDSNDESIQWLIKAEVAKWNQKGVNIIYRHRLIRT GYKAGNLKSAMGCDYVKDYEFVTIFDADFQPNPDFLKLTVPHFKGNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGTFLNFFGFNGTAGV WRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIITSKMAFWKKANLIFLFFLLRKLIL PFYSFTLFCIILPLTMFVPEAELPMWVICYVPVLMSFLNILPTPKSIPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLLAAAE RDSKTMNQAQICRGASETELELLNQLKEQKEANPTPVKKVNKIYRKELALAFLLLTASVRSLLSAQGVHFYFLLFQGVTFLVVGLDLIGEQIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	0	1	Pt-ATCSLC05.4
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	3.00	0.9006
AT5G65470			O-fucosyltransferase family pr...		Potri.007G011000 [exp]	4.69	0.8087
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	7.74	0.8606
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	9.94	0.8288
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	12.64	0.8296
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	13.74	0.8442
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	13.85	0.8832
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	13.96	0.8234
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	22.58	0.8166
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	28.24	0.8138

Compare expression of checked genes

Potri.006G270900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.