Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24610 494 / 7e-172 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT4G30360 485 / 3e-168 ATCNGC17 cyclic nucleotide-gated channel 17 (.1) AT5G14870 447 / 9e-154 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT3G48010 426 / 2e-145 ATCNGC16 cyclic nucleotide-gated channel 16 (.1) AT1G15990 383 / 1e-128 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT5G57940 383 / 1e-128 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3) AT1G19780 379 / 1e-126 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G30560 374 / 5e-125 ATCNGC9 cyclic nucleotide gated channel 9 (.1.2) AT2G23980 372 / 4e-124 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT2G28260 367 / 7e-123 ATCNGC15 cyclic nucleotide-gated channel 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G009200 [exp] 582 / 0 AT2G24610 939 / 0.0 cyclic nucleotide-gated channel 14 (.1) Potri.018G097600 [exp] 503 / 5e-176 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.017G067000 [exp] 437 / 4e-150 AT3G48010 964 / 0.0 cyclic nucleotide-gated channel 16 (.1) Potri.013G108200 [exp] 402 / 7e-137 AT5G14870 949 / 0.0 cyclic nucleotide-gated channel 18 (.1) Potri.018G106100 [exp] 392 / 4e-132 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.009G010700 [exp] 389 / 8e-131 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.003G183000 [exp] 385 / 6e-129 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.012G002200 [exp] 367 / 1e-122 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.015G019100 [exp] 365 / 9e-122 AT5G53130 1024 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019983 [exp] 509 / 2e-177 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10015510 [exp] 507 / 1e-176 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10023203 [exp] 491 / 1e-168 AT4G30360 1002 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10042434 [exp] 455 / 2e-156 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10020122 [exp] 436 / 2e-149 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026233 [exp] 436 / 3e-149 AT2G24610 922 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10026924 [exp] 435 / 1e-147 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10042132 [exp] 428 / 1e-146 AT3G48010 902 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10002363 [exp] 427 / 6e-146 AT3G48010 919 / 0.0 cyclic nucleotide-gated channel 16 (.1) Lus10039415 [exp] 421 / 3e-143 AT5G14870 980 / 0.0 cyclic nucleotide-gated channel 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G271480.2 pacid=42769213 polypeptide=Potri.006G271480.2.p locus=Potri.006G271480 ID=Potri.006G271480.2.v4.1 annot-version=v4.1 ATGCAATCTATCACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGACGAGACACAGAAGAGTGGATGAGACATCGTCAACTGCCCCAAAGTTTGCGTGAAC ATGTCAGAAGATTTGTTCAATACAAGTGGCTTGCAACTAGAGGGGTTGATGAAGAATCAATTCTGCGTGCATTACCTATGGATCTTCGTCGAGACATCCA GCGTCACCTATGCTTGGACCTTGTTAGACGAGTTCCTTTTTTCTCGCAGATGGATGATCAGCTACTGGATGCCATATGTGAGCGCTTAGTGTCCTGTTTG AGTACTCAAGGAAACTACATAGTTCGAGAAAGTGATCCGGTTACGGAGATGCTTTTTATTATCAGGGGAAAGCTAGAGAGCTCAACTACAAATGGAGGGC GAACAGGTTTCTTCAATTCAATTACTTTGAGACCTGGTGACTTCTGCGGTGAAGAGCTGCTTGCCTGGTCATTGCTTCCAAAATCTACTCTCAACTTACC TTCTTCCACAAGGACAGTGAGAGCACTAGAAGAAGTGGAAGCATTTGCATTGCGAGCAGAAGACCTCAAGTTCGTTGCCAATCAGTTTAGACGTCTCCAT AGCAAGAAACTACAGCATACCTTCCGTTTCTACTCTTACCATTGGAGAAGCTGGGCTGCCTGCTTTATTCAGGCTGCTTGGCGTCGACACAAGAAGAGGA TGATGGCAAAGAGCCTGAGCATGTCAGAGTCCTTCTCAGTTTCTGTTGATGAGCAAACAGTTTGTGATGAAACAACACTAGAGGAGGATGAACCAAGTTT TGCACCTTCAAATTCTCAAGCAAAACAGCACCTTGGTGTTACAATACTAGCTTCAAGATTTGCTGCAAACACAAGGAGAGGGGCACAGAAAGTCAAGAAT GTTGAAATGCTCAAGTTGCAAAAACCTGAAGAGCCAGACTTCTCTACAGAACCAGATGATGACTAG
AA sequence Show only first row Show all	>Potri.006G271480.2 pacid=42769213 polypeptide=Potri.006G271480.2.p locus=Potri.006G271480 ID=Potri.006G271480.2.v4.1 annot-version=v4.1 MQSITVRLEEWRLKRRDTEEWMRHRQLPQSLREHVRRFVQYKWLATRGVDEESILRALPMDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSCL STQGNYIVRESDPVTEMLFIIRGKLESSTTNGGRTGFFNSITLRPGDFCGEELLAWSLLPKSTLNLPSSTRTVRALEEVEAFALRAEDLKFVANQFRRLH SKKLQHTFRFYSYHWRSWAACFIQAAWRRHKKRMMAKSLSMSESFSVSVDEQTVCDETTLEEDEPSFAPSNSQAKQHLGVTILASRFAANTRRGAQKVKN VEMLKLQKPEEPDFSTEPDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	0	1
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.017G048400 [exp]	3.46	0.7827
AT4G20040			Pectin lyase-like superfamily ...		Potri.003G075500 [exp]	8.36	0.7557
AT5G36930			Disease resistance protein (TI...		Potri.019G018800 [exp]	16.85	0.7962
					Potri.018G007201 [exp]	32.24	0.7379
AT5G24750			UDP-Glycosyltransferase superf...		Potri.003G021100 [exp]	34.14	0.7231
AT1G17820			Putative integral membrane pro...		Potri.018G152400 [exp]	38.27	0.7894
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.017G141000 [exp]	47.11	0.7610
AT5G36930			Disease resistance protein (TI...		Potri.019G016425 [exp]	52.72	0.7668
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015101 [exp]	65.49	0.6903
AT1G05950			unknown protein		Potri.007G127800 [exp]	68.93	0.6602

Compare expression of checked genes

Potri.006G271480 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.