Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78570 1079 / 0 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 1050 / 0 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 1047 / 0 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G63000 473 / 2e-164 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT2G28760 113 / 3e-27 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 111 / 2e-26 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 110 / 2e-26 UXS5 UDP-XYL synthase 5 (.1.2) AT4G20460 109 / 2e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G53520 108 / 7e-25 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G62830 106 / 3e-24 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G103700 [exp] 1077 / 0 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 1070 / 0 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.003G120000 [exp] 473 / 2e-164 AT1G63000 532 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.001G112000 [exp] 471 / 1e-163 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.010G207200 [exp] 111 / 2e-26 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 110 / 3e-26 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.014G129200 [exp] 111 / 5e-26 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G053100 [exp] 109 / 7e-26 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.002G204400 [exp] 108 / 4e-25 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042497 [exp] 1057 / 0 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 1055 / 0 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 1005 / 0 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005560 [exp] 966 / 0 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 869 / 0 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 860 / 0 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 858 / 0 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10014147 [exp] 478 / 2e-166 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10006719 [exp] 478 / 2e-166 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10005450 [exp] 116 / 4e-28 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G272700.2 pacid=42769500 polypeptide=Potri.006G272700.2.p locus=Potri.006G272700 ID=Potri.006G272700.2.v4.1 annot-version=v4.1 ATGTCTTCTGATCCTGCTCCATATGCGCCGAGAAAGATCCTCATTACCGGTGCTGCCGGATTTATAGCCTCTCATGTGATTCGTAGATTGATCAAGGACT ATCCTGATTACAAGATTGTTGCCCTTGACAAGCTAGACTACTGCTCCAACCTCAAGAACCTTGCTACATGTCGCGGCTCGCCGAATTTCAAGTTTGTTAA GGGTGATATTGCTTGTGCTGATCTTGTAAATCACCTGTTGATTGCTGAGGATATTGATACGATCATGCATTTTGCTGCTCAAACTCATGTGGATAATTCA TTTGGGAATTCATTTGAATTCACAACCAACAATATATATGGCACTCATGTGCTTCTTGAAGCCTGTAAGGTCACAAAGAAAATCAAGAGGTTCATTCATG TTAGTACCGATGAAGTTTATGGTGAAACTGATATGGAGACAGACATTGGCAATCCTGAGGCTTCTCAGCTTCTTCCTACAAATCCTTACTCTGCGACGAA AGCAGGGGCTGAAATGTTGGTCATGGCTTATCATAGATCTTATGGCCTTCCTATCATTACCACTAGAGGCAACAATGTGTATGGCCCTAACCAGTATCCT GAAAAGCTTATCCCCAAATTTATTCTCCTGGCTCTCAAAGGAGAGCAGTTGCCGATTCATGGTGATGGATCGAATGTTAGAAGCTTTTTATACTGCGAGG ATGTGGCAGAGGCATTTGATGTGATACTTCACAAGGGAGCTATTGGACATGTTTATAATATAGGGACCAAGAAGGAGAGGCGAGTCCTCGATGTGGCAGA GGATATCTGTAAGCTGTATGGATTGGATCCTGAAAAATCTATCAACTATGTTCAAGATAGGCCTTTCAACGATCATCGATATTTCTTGGATGATCAAAAG CTCAAGAAGCTTGGGTGGCAGGAAAGTACTCCTTGGGAGGAAGGGCTAAAGATGACAATGGAATGGTACACGAAGAATCCTGATTGGTGGGATGATGTAT CTGCTGCTCTTCACCCACATCCACGCTTGAGTATGATTGCTCAATCCAATGATGATTCATGGTTCTCTCAGAAGGGACTCATAAGTGATGCAAAGGAAGC TGGTAAAAGTGATGGCAGTTCAGGACTAAAGTTCTTGATATATGGCAAGACAGGTTGGATAGGGGGGTTGCTAGGGAAGCTTTGTAAGGATGGGGGCATT GCATTTGAGTATGGTCAGGGAAGATTGGAAGATAGAAAGTCAATTCTCAAGGATATAAAGAACATAAATCCAACCCATGTGTTCAATGCTGCTGGGGTTA CTGGAAGGCCTAATGTTGATTGGTGCGAATCGCACAAGGTAGAAACAATTAGGACTAATGTGGTAGGTACATTGACTTTAGCAGATGTTTGCAAGGAGCA TAATCTCTTGATGATGAATTTTGCAACTGGCTGCATATTTGAATATGATCAAGATCATCAAGAAGGATCAGGAATTGGATTCAAAGAGGAGGATAAACCG AATTTCACAGGATCTTTCTACTCCAAAACCAAGGCCATGGTGGAGGAGCTGCTGAGAGAATATGAGAACGTTTGCACGCTGCGAGTCCGGATGCCAATAT CATCCGATCTCAGCAACCCAAGAAATTTCATAACGAAGATCACTCGTTACGACAAAGTGGTAAACATACCAAATAGCATGACAGTGCTAGATGAGCTCCT GCCAATCTCAATCGAGATGGCAAAAAGAAATTGCAGAGGAATATGGAACTTCACCAATCCAGGAGTGGTAAGCCACAACGAGATCTTAGAAATGTACCGA GACTACATCGACCCTGAATTCAAATGGATGAATTTTGATCTAGAAGAGCAGGCCAAGGTGATAGTAGCACCAAGGAGCAACAATGAGCTGGATGGTACAA AGCTGAAGAATGAATTCCCTGAAACGTTATCAATTAAAGAATCAATACTTGAGTATGTATTCAAGCCCAACAAGAAGACTTGA
AA sequence Show only first row Show all	>Potri.006G272700.2 pacid=42769500 polypeptide=Potri.006G272700.2.p locus=Potri.006G272700 ID=Potri.006G272700.2.v4.1 annot-version=v4.1 MSSDPAPYAPRKILITGAAGFIASHVIRRLIKDYPDYKIVALDKLDYCSNLKNLATCRGSPNFKFVKGDIACADLVNHLLIAEDIDTIMHFAAQTHVDNS FGNSFEFTTNNIYGTHVLLEACKVTKKIKRFIHVSTDEVYGETDMETDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITTRGNNVYGPNQYP EKLIPKFILLALKGEQLPIHGDGSNVRSFLYCEDVAEAFDVILHKGAIGHVYNIGTKKERRVLDVAEDICKLYGLDPEKSINYVQDRPFNDHRYFLDDQK LKKLGWQESTPWEEGLKMTMEWYTKNPDWWDDVSAALHPHPRLSMIAQSNDDSWFSQKGLISDAKEAGKSDGSSGLKFLIYGKTGWIGGLLGKLCKDGGI AFEYGQGRLEDRKSILKDIKNINPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHNLLMMNFATGCIFEYDQDHQEGSGIGFKEEDKP NFTGSFYSKTKAMVEELLREYENVCTLRVRMPISSDLSNPRNFITKITRYDKVVNIPNSMTVLDELLPISIEMAKRNCRGIWNFTNPGVVSHNEILEMYR DYIDPEFKWMNFDLEEQAKVIVAPRSNNELDGTKLKNEFPETLSIKESILEYVFKPNKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.006G272700 [exp]	0	1
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	4.24	0.8804
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.006G171700 [exp]	5.19	0.8534
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.015G043400 [exp]	8.12	0.8244
AT1G45688			unknown protein		Potri.007G045000 [exp]	9.48	0.8275
AT5G67050			alpha/beta-Hydrolases superfam...		Potri.007G044500 [exp]	10.77	0.8315
AT5G35550	MYB	ATTT2, TT2, AtM...	TRANSPARENT TESTA 2, MYB DOMAI...		Potri.006G221500 [exp]	10.90	0.8124	MYB183
AT1G70780			unknown protein		Potri.008G131600 [exp]	10.95	0.7502
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Potri.011G103600 [exp]	16.61	0.7542
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137600 [exp]	17.94	0.7800
AT4G22592		CPuORF27	conserved peptide upstream ope...		Potri.001G120550 [exp]	23.06	0.7349

Compare expression of checked genes

Potri.006G272700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.