Plant FIBer expression Database

Potri.006G272800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24580 585 / 0 FAD-dependent oxidoreductase family protein (.1)
AT5G24155 39 / 0.0008 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G008700
[exp]
724 / 0 AT2G24580 569 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042437
[exp]
566 / 0 AT2G24580 540 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Lus10026231
[exp]
564 / 0 AT2G24580 532 / 0.0 FAD-dependent oxidoreductase family protein (.1)
Lus10020132
[exp]
505 / 1e-179 AT2G24580 501 / 6e-178 FAD-dependent oxidoreductase family protein (.1)
Lus10026933
[exp]
172 / 5e-08 AT2G24580 153 / 6e-43 FAD-dependent oxidoreductase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF13450 NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence
>Potri.006G272800.1 pacid=42769240 polypeptide=Potri.006G272800.1.p locus=Potri.006G272800 ID=Potri.006G272800.1.v4.1 annot-version=v4.1
ATGGAATGTTCCAGCCACCAATTTGATGTTATCGTTGTCGGTGCCGGCATTATGGGCAGTTCCACTGCCTATCAACTAGCAAAAAGAGGCCAAAAAACTC
TGTTGCTAGAGCAATTTGATTTCTTGCACCACCGTGGATCCTCACATGGCGAGTCACGAACTTTACGTGCAGCTTACACTGAAGACTACTACTGCGACAT
GGTTAAGGAATCCTCACAAATTTGGGAGCAGGCTCAATCAGAGATTGGCTACAAGGTTTATTTCAAAGCACAGCAATTCGATATGAGCCCCTCGGATAAC
AAGAGCCTTCTCTCGATTATCTCTAGCTGCGAAAAAAAGTCCATCCCATATCGGGTCTTAGACCGGCAACAAGTGTCCGACCGATTCTCAGGCTTGATTA
ACCTACCGGAGGATTGGTTTGGCGTGTTAACTGATGTTGGCGGGGTTATAAAGCCCACCAAGGCAGTGTCCATGTTCCAAGCATTGGCATTCCAGAGGGG
TGCAGTTTTGAGAGACAACATGGAGGTGAAAAACGTTGTGAAAGACGAGGTAAAAGGAGGGGTAAATGTGGAGACTGCCGATGGTGAAAAGTTTTGGGGT
AAAAAATGTGTGATTACTGCTGGGGCTTGGGTAAGAAAGTTAGTTAAAACGGTTGGTGGGCTTGAATTGCCTATACAAGCCTTGGAGACCACAGTGTGTT
ATTGGAGGATCAAGGAGGGGCATGAGGCGAAGTTTGCCATTGGAAGTGATTTTCCTACGTTTGTAAGCTACGGGGAGCCCTACGTTTTCGGCACACCGTC
GTTGGAGTTTCCAGGATTGATCAAGATTTCTGTGAACGGAGGGTACCCTTGTGACCCTGATAAGAGGCCATGGGATCCAGCTGGGATTTCATTGGATTCT
CTGAAGGAATGGATCAAGGGGAGATTCTCAGGCTTGGTTGATTATGGCGGACCGGTTGCTACTCAGTCATGTATGTACTCAATGACCCCAGATGAGGATT
TTGTGCTTGATTTTCTCGGCGGGGAGTTTGGGAAGGATGTGGTGATTGGTGGTGGGTTTTCGGGTCATGGGTTCAAGATGGCTCCAGTTGTGGGCAGGGT
TTTGGCTGACCTTTTGCTTAGTGGGGAGGCGAAGGGCGTGGAAATGAAGTACTTTAGGGCTCAAAGGTTTCAGGATAATCCTAAAGGGAATGTGAAGGGA
TTATGA
AA sequence
>Potri.006G272800.1 pacid=42769240 polypeptide=Potri.006G272800.1.p locus=Potri.006G272800 ID=Potri.006G272800.1.v4.1 annot-version=v4.1
MECSSHQFDVIVVGAGIMGSSTAYQLAKRGQKTLLLEQFDFLHHRGSSHGESRTLRAAYTEDYYCDMVKESSQIWEQAQSEIGYKVYFKAQQFDMSPSDN
KSLLSIISSCEKKSIPYRVLDRQQVSDRFSGLINLPEDWFGVLTDVGGVIKPTKAVSMFQALAFQRGAVLRDNMEVKNVVKDEVKGGVNVETADGEKFWG
KKCVITAGAWVRKLVKTVGGLELPIQALETTVCYWRIKEGHEAKFAIGSDFPTFVSYGEPYVFGTPSLEFPGLIKISVNGGYPCDPDKRPWDPAGISLDS
LKEWIKGRFSGLVDYGGPVATQSCMYSMTPDEDFVLDFLGGEFGKDVVIGGGFSGHGFKMAPVVGRVLADLLLSGEAKGVEMKYFRAQRFQDNPKGNVKG
L

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24580 FAD-dependent oxidoreductase f... Potri.006G272800
[exp]
0 1
AT1G68540 TKPR2, CCRL6 tetraketide alpha-pyrone reduc... Potri.008G120200
[exp]
2.23 0.9237
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.008G029700
[exp]
4.24 0.9349
AT1G50020 unknown protein Potri.001G289400
[exp]
9.38 0.9285
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Potri.014G021400
[exp]
10.39 0.9304 Pt-IFS1.54
AT3G13730 CYP90D1 "cytochrome P450, family 90, s... Potri.003G038200
[exp]
12.40 0.9057
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.018G012600
[exp]
21.21 0.8963
AT1G20070 unknown protein Potri.002G019700
[exp]
22.58 0.8609
AT1G68590 Ribosomal protein PSRP-3/Ycf65... Potri.004G101000
[exp]
23.81 0.9087
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Potri.018G012100
[exp]
24.81 0.8863
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.010G073166
[exp]
25.69 0.9163

Potri.006G272800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.