Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 635 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 626 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 626 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 602 / 0 EFR EF-TU receptor (.1) AT2G24130 447 / 6e-143 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 383 / 7e-117 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G39390 335 / 2e-105 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 345 / 2e-103 Leucine-rich repeat protein kinase family protein (.1) AT1G17750 342 / 2e-102 AtPEPR2 PEP1 receptor 2 (.1) AT4G08850 335 / 3e-100 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007866 [exp] 868 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 811 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 801 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 799 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 796 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 789 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 785 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 783 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 781 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020140 [exp] 887 / 0 AT3G47570 740 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026938 [exp] 824 / 0 AT5G20480 735 / 0.0 EF-TU receptor (.1) Lus10004388 [exp] 748 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010199 [exp] 742 / 0 AT3G47570 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 738 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 733 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 730 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 726 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 709 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014500 [exp] 709 / 0 AT3G47570 663 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G273001.2 pacid=42769492 polypeptide=Potri.006G273001.2.p locus=Potri.006G273001 ID=Potri.006G273001.2.v4.1 annot-version=v4.1 ATGCTGCGGTTGCATAATAATTTGCTCAGTGGAGAAATTCCTCCCAATATTTCAAGTTGCTTGAACCTTATCAGCATCACACTTGGTCGCAACAACTTGA TAGGCAGGATTCCATTGGAATTCAGTTCTTTATTGAACCTTCAATTACTGAATGTCGAGTTCAATGATCTGACAGGAGGAATCCCTTCATTTTTTGGCAA CTATTCATCTCTGCAAGTGCTGAGCACAACCTTCAACAATTTTGGTGGAACACTCCCTGATACTCTTGGTCAACTAAAGAACTTGTATTACATTTCAATG GGTGCAAACTTCTTGACCGGTACCATCCCTTCATCACTATACAATCTTTCTTTTTTGAGTATTTTTTGCTTCCCACAAAACCAGCTTCAAGGGACTCTCC CCTCAGACTTGGGCAACGAATTTCCTTACCTTGTTGAGCTTAATGTTGGTGACAACCAAATTACTGGAAGCATTCCAATTTCGTTGTCCAATTCTTCATA CCTGGAGAGACTTACTATCGCCATAAATGGATTTACCGGAAACGTGCCTTCGTTGGAGAAGATGCATAAACTTTGGTGGCTAAGCATCTCCACAAATCAT CTTGGAACTGGGGAAGCTCGTGATTTGGATTTCTTGTCTACCGTTAGCAACGCAACTAGTTTGCAACTTATGGCTATAAACGTCAACAATTTTGGTGGGA TGTTGCCTAGTGCCATCACCAACTTTACCAGCCTTAGCATAATGACCCTGGATTCTAATCGGATATTTGGGAGCATCCCAGCTGGTTTGGGAAATTTGGT TAACTTGGAGATGCTATATATGGGGAAAAACCAATTCACAGGTGATATTCCTGAAGAAATTGGAAAACTTCAGCAACTAAAGAAGTTGGGTCTTCAAGGA AACAAATTATCAGGTAACATTCCATCTTCTTTCGGAAACTTAACCCTGTTGACCCATCTCTACATGTATCAAAGCAGTTTAAAGGGTAGCATCCCACCAG AACTAGGCAAATGCCTAAACTTGTTGTTATTGAATCTCAGTCAAAACAACCTTACTGGTGCAATCCCAAAAGAAGTTTTGAGCATCCCATCCTTGACAAT CTATATGGACCTATCACGAAACAACTTGATTGGTTCCCTTCCTACAGAAGTAGGAACTTTGACAAATCTTGGAATATTGGATATTTCGCATAACATGTTG TCTGGAGAAATTCCAGGCACTCTTGGCAGTTGTGTAAGATTGGAATCTTTGTTCATGCAAAACAACTTCTTTCAGGGTACTATCCCCTCATCTTTTATTT CATTGAGAGGTCTACAAGTTTTAAATCTGTCACACAACAACTTGACTGGAAGCATTCCAGATTTTTTCTTGGATTTTCGCGCGTTGGCTACCTTGAATCT TTCTTTCAATAATTTTGAGGGTTTGGTACCGACAGATGGAGTGTTTCGGAATTCGAGTGCAGTTTCAGTGGTTGGAAACAGTAAGCTATGTGGCGGCATT GCTGAGTTCCAGCTACTCGAATGCAATTTCAAAGGGACTAAAAAGGGGAGATTGACACTTGCAATGAAACTAGTCATTGCTGCTTCTGCACTTCTGTCCA CTGATGGGTTCTCCTTGACTAATTTGCTTGGTGTGGGTGGTTTTGGGTCTGTCTACAAAGGCATACTTGATAATGATGAAAAGCTTGTTGCAGTGAAGGT GCTAAACCTTCTAAACCCTAGAGCTTCCAAGAGCTTTAAAGCCGAATGTGAGGTCTTGAGGAATGTCAGGCATCGAAATCTTGTCAAGCTACTGACTGCA TGCTCTGGCAGTGACTATCAAGGAAATGATTTCAAGGCTTTGGTTTATGAATTCATGGTTAATGGGAGCCTTGAGGAGTGGCTGCATCCGATAACTCCTG GAATCGATGAGGCACGTGAATCATCAAGGAGCTTGAACTTTGTTCAGAGACTTAACATTGCCATTGATATTTCTTGTGCTCTAGAGTATCTTCACCGTGG TTGCAGAACACCAATCGTTCACTGTGATCTCAAGCCAAGCAATGTTCTCCTCGACGATGAAATGATAGGACATGTAGGAGATTTTGGGCTGGCAAGGTTC TTTCCTGAAGCCACTAATAACCTATCCTTTAATCGGTCAAGCACCAATGGAGTAAGAGGAACTATTGGCTACACTGCTCCAGAATATGGTATGGGAAATG AAGTGTCGACATCTGGTGATGTATTCAGTTATGGAATCCTGTTATTGGAGATGTTCTCAGGGAAGAGACCGACTGACGTAATCTTTGAAGACAGCTTGAA CCTTCATACCTACATGAAAGCTGCTTTGCCGGGAAAAGTGGAAGAAATTTTGGATCCAATTCTTGTTCAGGAAATAAAAGGAGAAAGAAGCAGCAGTTAT ATGTGGAATAGCAAAGTGCAGGACTGCGTCGTTTCAGTATTTGAAGTAGGAATTGCTTGCTCTGCTGAATTGCCTAGCGAACGGATGGATATCAGTGAGG TTACTGCTGAGCTACAGGCGATTAAAGAAAAACTTCTTAGAAGTGAAGACATGGGGACACACGAAGTACAGGTAGTATTGCAGTCATGA
AA sequence Show only first row Show all	>Potri.006G273001.2 pacid=42769492 polypeptide=Potri.006G273001.2.p locus=Potri.006G273001 ID=Potri.006G273001.2.v4.1 annot-version=v4.1 MLRLHNNLLSGEIPPNISSCLNLISITLGRNNLIGRIPLEFSSLLNLQLLNVEFNDLTGGIPSFFGNYSSLQVLSTTFNNFGGTLPDTLGQLKNLYYISM GANFLTGTIPSSLYNLSFLSIFCFPQNQLQGTLPSDLGNEFPYLVELNVGDNQITGSIPISLSNSSYLERLTIAINGFTGNVPSLEKMHKLWWLSISTNH LGTGEARDLDFLSTVSNATSLQLMAINVNNFGGMLPSAITNFTSLSIMTLDSNRIFGSIPAGLGNLVNLEMLYMGKNQFTGDIPEEIGKLQQLKKLGLQG NKLSGNIPSSFGNLTLLTHLYMYQSSLKGSIPPELGKCLNLLLLNLSQNNLTGAIPKEVLSIPSLTIYMDLSRNNLIGSLPTEVGTLTNLGILDISHNML SGEIPGTLGSCVRLESLFMQNNFFQGTIPSSFISLRGLQVLNLSHNNLTGSIPDFFLDFRALATLNLSFNNFEGLVPTDGVFRNSSAVSVVGNSKLCGGI AEFQLLECNFKGTKKGRLTLAMKLVIAASALLSTDGFSLTNLLGVGGFGSVYKGILDNDEKLVAVKVLNLLNPRASKSFKAECEVLRNVRHRNLVKLLTA CSGSDYQGNDFKALVYEFMVNGSLEEWLHPITPGIDEARESSRSLNFVQRLNIAIDISCALEYLHRGCRTPIVHCDLKPSNVLLDDEMIGHVGDFGLARF FPEATNNLSFNRSSTNGVRGTIGYTAPEYGMGNEVSTSGDVFSYGILLLEMFSGKRPTDVIFEDSLNLHTYMKAALPGKVEEILDPILVQEIKGERSSSY MWNSKVQDCVVSVFEVGIACSAELPSERMDISEVTAELQAIKEKLLRSEDMGTHEVQVVLQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	1.41	0.9345
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	2.00	0.9143
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	2.64	0.9021
AT5G25930			Protein kinase family protein ...		Potri.018G057100 [exp]	3.00	0.9138
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	6.92	0.8998
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.010G097700 [exp]	7.41	0.9090	PSKR.1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	7.74	0.8587	NANN.1
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	10.67	0.9082
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105100 [exp]	10.81	0.8467
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075300 [exp]	14.14	0.8974

Compare expression of checked genes

Potri.006G273001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.