Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24890 130 / 1e-36 unknown protein AT2G24550 105 / 4e-27 unknown protein AT4G31510 85 / 8e-20 unknown protein AT5G21940 64 / 6e-12 unknown protein AT3G43850 64 / 1e-11 unknown protein AT3G03170 45 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G008200 [exp] 327 / 4e-114 AT5G24890 131 / 3e-37 unknown protein Potri.018G048100 [exp] 65 / 4e-12 AT5G21940 110 / 4e-29 unknown protein Potri.006G219800 [exp] 62 / 3e-11 AT5G21940 135 / 3e-38 unknown protein Potri.001G190700 [exp] 44 / 4e-05 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.009G120300 [exp] 42 / 9e-05 AT4G26288 45 / 2e-06 unknown protein Potri.004G158800 [exp] 40 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026939 [exp] 139 / 1e-39 AT2G24550 116 / 4e-31 unknown protein Lus10020142 [exp] 126 / 9e-35 AT2G24550 113 / 9e-30 unknown protein Lus10038265 [exp] 50 / 2e-07 AT5G56550 66 / 9e-14 oxidative stress 3 (.1) Lus10025837 [exp] 49 / 4e-07 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038073 [exp] 47 / 3e-06 AT3G43850 50 / 4e-07 unknown protein Lus10009793 [exp] 45 / 1e-05 AT5G24890 51 / 1e-07 unknown protein Lus10034985 [exp] 43 / 8e-05 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10012939 [exp] 41 / 0.0004 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10011137 [exp] 40 / 0.0006 AT5G56550 74 / 2e-16 oxidative stress 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G273100.1 pacid=42769184 polypeptide=Potri.006G273100.1.p locus=Potri.006G273100 ID=Potri.006G273100.1.v4.1 annot-version=v4.1 ATGGAGGTTTTGGTGGGACCCACTTTTAGCATCGGCGGCGATGTTTCCTCAAATGGGTCGTCGTTCGTTGTACCTCCACCACCGCAGGAGAAGCACCAGG TGGGAGTGGCCCCGCCGTTCTTGTTCTTGAAAGAGGAAGATGGTGATGGTGATGAGAGTCCGATCTCGAGCCGGGGCGGGTCGGGTATACACACGGATGA TTTATCTGAGAGTTCTTCGTCAATCGGAGCTCCGGATGACAGTGAAGAAGAAGATGACGACGACGACGACGAAGAAGATGGTGTCGTTTCTTCGAAAAAG AACAACGTTTTGGGCTCTTTGAATTCTTTAGAAGATGCTCTTCCTATCAAGAGGGGATTATCGAATCATTTTTCAGGGAAATCAAAGTCATTCACAAATT TATCAGAAGTGAATACAGTAAACACAGTGAAGGAATTGGAGAAGCCAGAGAATCCATTTAACAAAAGGAGGAGAATTTTAATGGTAAATAAATGGTCAAG GAAATCTTTTTACAGTTGGTCAAATCCAAAATCCATGCCTCTCCTCGCTCTGCATGAAGATGATGATGATGATGACGACGACGACCCAAGATTAGGAGCA GCACAAGCACAAGCACAAGATCAAGAAAACAAGGAAAATCCATCTGGTGAAGCACTTACACAAGGCATCATAGCAAGAAAATTGCACGAGAGGAGGTTTG CTAAGTTTGGTATGAAGTCTCAAAGTTGCTTCTCCCTTTCAGATCTGCAAGAAGATGAAGAAGATGATGATGCATAA
AA sequence Show only first row Show all	>Potri.006G273100.1 pacid=42769184 polypeptide=Potri.006G273100.1.p locus=Potri.006G273100 ID=Potri.006G273100.1.v4.1 annot-version=v4.1 MEVLVGPTFSIGGDVSSNGSSFVVPPPPQEKHQVGVAPPFLFLKEEDGDGDESPISSRGGSGIHTDDLSESSSSIGAPDDSEEEDDDDDDEEDGVVSSKK NNVLGSLNSLEDALPIKRGLSNHFSGKSKSFTNLSEVNTVNTVKELEKPENPFNKRRRILMVNKWSRKSFYSWSNPKSMPLLALHEDDDDDDDDDPRLGA AQAQAQDQENKENPSGEALTQGIIARKLHERRFAKFGMKSQSCFSLSDLQEDEEDDDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24890			unknown protein		Potri.006G273100 [exp]	0	1
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Potri.004G047100 [exp]	1.41	0.8127
AT4G28240			Wound-responsive family protei...		Potri.019G116300 [exp]	2.00	0.8212
AT2G39130			Transmembrane amino acid trans...		Potri.010G226000 [exp]	3.46	0.7892
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	10.39	0.7886
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Potri.006G173901 [exp]	12.72	0.7320
AT1G17665			unknown protein		Potri.003G038600 [exp]	14.96	0.7515
AT4G02715			unknown protein		Potri.002G050900 [exp]	16.70	0.7509
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.009G073200 [exp]	17.54	0.7450
AT3G20770	EIL	AtEIN3, EIN3	ETHYLENE-INSENSITIVE3, Ethylen...		Potri.004G197400 [exp]	20.14	0.7679	Pt-EIN3.1
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	22.36	0.7781

Compare expression of checked genes

Potri.006G273100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.