Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26090 46 / 2e-05 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G63350 46 / 3e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27190 42 / 0.0005 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G429430 [exp] 112 / 2e-27 AT4G27190 292 / 5e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.001G429890 [exp] 108 / 3e-26 AT4G27190 265 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.001G426030 [exp] 108 / 4e-26 AT1G61310 114 / 1e-25 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.001G422800 [exp] 108 / 5e-26 AT4G27190 282 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Potri.001G427210 [exp] 107 / 7e-26 ND / Potri.001G422900 [exp] 102 / 1e-25 ND / Potri.019G036875 [exp] 105 / 5e-25 AT4G27190 178 / 9e-45 NB-ARC domain-containing disease resistance protein (.1) Potri.001G432540 [exp] 97 / 2e-23 ND / Potri.005G041101 [exp] 94 / 4e-21 AT4G27220 229 / 2e-61 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G273250.1 pacid=42768985 polypeptide=Potri.006G273250.1.p locus=Potri.006G273250 ID=Potri.006G273250.1.v4.1 annot-version=v4.1 ATGCCACCCGTAATAGAGCAGCATCAACACACTTGTTTGATGCACCTGGAAAAGCTAGACCTTCAGTGTTTGGGATCCTTTAAAGGGTTATGCCATGGTG CACTACCTGCTGAATTGTCCATGTCTTTGCAGAAGCTCAAGAGTATGAGGTTTTTCAAGTGCGTGAAACTGTCTAGTGTCTTTGCTTCACTTGAACTGCT GCAACGGTTCGATGAACTTGAAGAGCTTTCAGTAGATTCATGTGAAGCACTGGAGTATGTATTCAACCTCAAAATCGAAAAGCCTGCGTTTGAGGAGAAA AAGATGCTGTCCCATTTAAGAGAACTTGCACTTTGTGATTTGCCAGCAATGAAGTGCATATGGGACGGCCCTACTAGACTACTGCGCCTGCATAATCTTC AAATTGCAGACATTCAAAACTGCAAGAAACTTAAAGTTCTCTTCGATGCTTCTGTTGCTCAAAGTCTTTGCCAATTGAAAAAACTGCTCGTAAAAGGTTG TGATGAGCTGGAAACAGTTGTTGCAAAGGAACCGCAACGACAAGATGGCAGAGTGACGGTTGATATTGTGGTGCTCCCTCAATTAGTAGAGCTTTCACTA CTCTACCTTCCTAACCTTGCTGCTTTTTGCTTGGATAGCTTGCCTTTCAAATGGCCATCCTTGGAAAAAGTAGAGGTTCGTCAGTGTCCTAAAATGGAAA CCTTTGCTGCTATCGTGGATTCAGATGAAAACCAAAGCACACCAAAGTTGAAGCAGATCAAATTGGATGAAGTTGATTTGATACTTCATGGAAGGAGCTT GAACAAGTTCATACAAAAGTACTCCGAGGCAAGGGAGTTGCGGAACCTGATAAATGACCATCAGAGTCGTATGCAAGGATTGACAGAAAGTTAG
AA sequence Show only first row Show all	>Potri.006G273250.1 pacid=42768985 polypeptide=Potri.006G273250.1.p locus=Potri.006G273250 ID=Potri.006G273250.1.v4.1 annot-version=v4.1 MPPVIEQHQHTCLMHLEKLDLQCLGSFKGLCHGALPAELSMSLQKLKSMRFFKCVKLSSVFASLELLQRFDELEELSVDSCEALEYVFNLKIEKPAFEEK KMLSHLRELALCDLPAMKCIWDGPTRLLRLHNLQIADIQNCKKLKVLFDASVAQSLCQLKKLLVKGCDELETVVAKEPQRQDGRVTVDIVVLPQLVELSL LYLPNLAAFCLDSLPFKWPSLEKVEVRQCPKMETFAAIVDSDENQSTPKLKQIKLDEVDLILHGRSLNKFIQKYSEARELRNLINDHQSRMQGLTES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.006G273250 [exp]	0	1
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Potri.001G107100 [exp]	26.21	0.8931
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Potri.009G019700 [exp]	28.19	0.8913
AT5G05800			unknown protein		Potri.015G012100 [exp]	34.20	0.8909
AT4G35030			Protein kinase superfamily pro...		Potri.009G140300 [exp]	36.24	0.8884
AT4G36490		ATSFH12	SEC14-like 12 (.1)		Potri.007G020300 [exp]	39.50	0.8901	Pt-LJPLP.1
AT3G50560			NAD(P)-binding Rossmann-fold s...		Potri.007G040900 [exp]	48.17	0.8882
AT5G05800			unknown protein		Potri.001G339400 [exp]	50.59	0.8884
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	51.38	0.8878
AT5G03990			unknown protein		Potri.006G262800 [exp]	54.91	0.8876
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177800 [exp]	61.44	0.8865

Compare expression of checked genes

Potri.006G273250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.