Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10690 721 / 0 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein (.1) AT5G39710 109 / 1e-24 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31400 100 / 1e-21 GUN1 genomes uncoupled 1 (.1) AT5G65560 100 / 1e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 97 / 1e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 96 / 2e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 96 / 2e-20 PGR3 proton gradient regulation 3 (.1) AT1G63070 95 / 4e-20 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G18475 93 / 7e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G06000 89 / 2e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G274133 [exp] 287 / 3e-94 AT5G10690 161 / 5e-47 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein (.1) Potri.009G105600 [exp] 106 / 8e-24 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G103600 [exp] 99 / 1e-21 AT5G18475 546 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 98 / 6e-21 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.017G131400 [exp] 94 / 8e-20 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G090400 [exp] 91 / 5e-19 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 91 / 9e-19 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 91 / 9e-19 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 90 / 1e-18 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 111 / 3e-25 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 107 / 6e-24 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 105 / 2e-23 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 93 / 3e-19 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 91 / 9e-19 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10005540 [exp] 90 / 1e-18 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 91 / 2e-18 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 90 / 2e-18 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 89 / 3e-18 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10041421 [exp] 88 / 8e-18 AT2G16880 668 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G273400.1 pacid=42768838 polypeptide=Potri.006G273400.1.p locus=Potri.006G273400 ID=Potri.006G273400.1.v4.1 annot-version=v4.1 ATGGGTTTTTTCACTACTACCATCACCAGCAATGCCATGCAAAATCATCTTCTCTCCCTCTATTCTACTAAGTTCCCATCATCAAACCCATTACCCACTT TCAAAATCACCTTCTCTTATTCCTCTACACCCACTCGTCGTAGGTTTCACAAGCCTCATCATAGTCTCAAACGCCTTACCTTTCGTATAGTTCAGCTCAC TAGACGAAGACAATTGGAACAGATTTTTGAGGAAGTCGAGAGTGCTAAGAGAAGGTATGGGAAGTTAAATACGATAGTTATGAATGCGGTGATGGAAGCT TGTGTGCATTGCGGGGATACCGAGTCTGCTCTTAAGGTGTTTGATGAAATGTGCAAGTCAGAAAGTTGTGGGGTTGATGGTGTCTCTTATGGGACTCTGT TGAAGGGTTTGGGTGTGGCTAGAAGAATTGATGAAGCATTTCAGATATTGGAATCAGTGGAAATGGGTACAGCTGTTGGAAGTCCAAAGTTGTCGGCTCC GATGATATTTGGTCTCTTAAATGCTCTAATTTCAGCAGGAGATATACGCCGAGCTAAGGGTCTTCTAGCCCGCTATGGTTATTTGCTTCATGAAAGCTGC AATCCTTCCATCTTGGTATATAACTTATTAATGAAGGGATATATAAGTGCTGGCTGTCCTCAAGATGCCTTGCCTGTGCATGATGAAATATTGGAGTTAG GATTAACCCCTGACAGGCTCACCTATAATACTCTGATATCTGCATGTGTGAAGGCTGGGAAATTGGATGCTGCAATGCAATTCTTTGACGAAATGAAGGA CAAAGCACAAAACTTTAGTCGTGACAAGCTTTATCCGGATGTTGTCACTTACACAACATTACTTCAGGGCTTTGGTGGTGCCAAGGATCTCCTGTCAGTT CTGAAGATTGTCTATGAAATGAAAATGCATCGGAATTTAGTTATTGATCGAACTGCATTCACAGCAATGGTTGATGCATTGCTAAACTGTGGTTCCATGA ATGGTGCCGTCTGTGTATTTGGAGAAATAATAAAACGTGCTGGTGTGAACCCAAAGCTTCGACCAAAGCCTCACCTCTATCTTTCCCTTATGCGTGCTTT TGCCAGTCAAGGAGATTACAATATGGTAAAAAATCTGCACAAGCGATTGTGGCCAGATTCATCTGGAGCCATCTCTCTAGCTCTTCAAGAAGAAGCAGAT CATCTTCTCATGGAGGCAGCTTTAAATGATGGCCAGGTTAATGTGGCTTTGGAAAATCTCACAAATGTTGTACTAAAATGGAAACGGATACCATGGACAA GTCGAGGAGGCATGGTTGCTATGCGCATAGAGGCCTTGTTGGGATTCACCAATTCCATATTCAGTCCTTATCTGCTTCCTCAGGTATCACCAAGTGAACC AATCGAGAGCATCATGATGCCACTAAAAGCAGCTAAGCCTTTACTTGGTACCCTCCACTTGAAGAAAGTGGTTATGCGCTTCTTTTGGGATCAAGTTGTG CCTATTGTAGATGACTGGGGCAGCTGTGTGGGACTATTGCATCGTGAAGACTGCACCGAGTTGAATGCCCCCCTGATGACAATGATGAGAAGCCCTCCAC CTTGTGTTACAACCACGACGTCTATCGGCCATGTGGTTGATCTAATTTTAGAAAAGATGTATAGAATGGTTGTTGTTGTAAAATATAGTAATTTAAATAG CTCTACTAACAGCTCAGGTTCTAAAACTGTTGGAGTTTTTACAACTGAACAATTGTTTAAACTTGTTGTGCCTGTACAACGGCCATTGGAGCAAGAAAGA ACTCTTGGTAGAAGATGGTGTGCGAATTTTGATACATAA
AA sequence Show only first row Show all	>Potri.006G273400.1 pacid=42768838 polypeptide=Potri.006G273400.1.p locus=Potri.006G273400 ID=Potri.006G273400.1.v4.1 annot-version=v4.1 MGFFTTTITSNAMQNHLLSLYSTKFPSSNPLPTFKITFSYSSTPTRRRFHKPHHSLKRLTFRIVQLTRRRQLEQIFEEVESAKRRYGKLNTIVMNAVMEA CVHCGDTESALKVFDEMCKSESCGVDGVSYGTLLKGLGVARRIDEAFQILESVEMGTAVGSPKLSAPMIFGLLNALISAGDIRRAKGLLARYGYLLHESC NPSILVYNLLMKGYISAGCPQDALPVHDEILELGLTPDRLTYNTLISACVKAGKLDAAMQFFDEMKDKAQNFSRDKLYPDVVTYTTLLQGFGGAKDLLSV LKIVYEMKMHRNLVIDRTAFTAMVDALLNCGSMNGAVCVFGEIIKRAGVNPKLRPKPHLYLSLMRAFASQGDYNMVKNLHKRLWPDSSGAISLALQEEAD HLLMEAALNDGQVNVALENLTNVVLKWKRIPWTSRGGMVAMRIEALLGFTNSIFSPYLLPQVSPSEPIESIMMPLKAAKPLLGTLHLKKVVMRFFWDQVV PIVDDWGSCVGLLHREDCTELNAPLMTMMRSPPPCVTTTTSIGHVVDLILEKMYRMVVVVKYSNLNSSTNSSGSKTVGVFTTEQLFKLVVPVQRPLEQER TLGRRWCANFDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10690			pentatricopeptide (PPR) repeat...		Potri.006G273400 [exp]	0	1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	9.64	0.9323
AT1G78010			tRNA modification GTPase, puta...		Potri.002G092600 [exp]	9.94	0.9099
AT5G27290			unknown protein		Potri.013G029000 [exp]	10.00	0.9313
AT3G01920			DHBP synthase RibB-like alpha/...		Potri.001G330100 [exp]	14.07	0.8958
AT2G28605			Photosystem II reaction center...		Potri.007G100800 [exp]	15.87	0.8959
AT1G50450			Saccharopine dehydrogenase (....		Potri.009G050100 [exp]	16.52	0.9275
AT3G11945		PDS2, ATHST	PHYTOENE DESATURATION 2, homog...		Potri.006G197600 [exp]	22.97	0.9188
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	24.59	0.9187
AT1G30680			toprim domain-containing prote...		Potri.001G461200 [exp]	26.26	0.8663
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	31.96	0.9024

Compare expression of checked genes

Potri.006G273400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.