Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 74 / 5e-18 unknown protein AT5G56980 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G273566 [exp] 229 / 4e-79 AT5G57510 75 / 4e-18 unknown protein Potri.018G006800 [exp] 153 / 4e-49 AT5G57510 61 / 1e-12 unknown protein Potri.018G094100 [exp] 89 / 8e-24 AT5G57510 107 / 5e-31 unknown protein Potri.001G008080 [exp] 37 / 0.0003 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042441 [exp] 92 / 2e-24 AT5G57510 64 / 9e-14 unknown protein Lus10026228 [exp] 90 / 1e-23 AT5G57510 62 / 6e-13 unknown protein Lus10028472 [exp] 72 / 5e-17 AT5G57510 87 / 1e-22 unknown protein Lus10033559 [exp] 71 / 1e-16 AT5G57510 84 / 1e-21 unknown protein Lus10009171 [exp] 62 / 5e-13 AT5G57510 88 / 6e-23 unknown protein Lus10017598 [exp] 61 / 3e-12 AT5G57510 80 / 6e-20 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.006G273500.1 pacid=42766906 polypeptide=Potri.006G273500.1.p locus=Potri.006G273500 ID=Potri.006G273500.1.v4.1 annot-version=v4.1 ATGGGGAAGCAGAGGTGGTCAGCTTTCGGCCCTTTGAAGAGGGCAGTCAAGAAAATAAACTTTCTACTTAGCTTCAATTTCAGAAAGTGGCGATTGGCTT CTATTCTTAGCATTGCGTCTTCTTCTTCCTCTAGAAGGACAGGGAGGTTGAGCTTTAATGATAGAATTGGATTGCATGGGGCAATTGAAGATGTTGAATC AGATCATCAAAAGTACAAGCCAGTTCGAACATTTGAAAGGGTTAGAAGTTATGGCTCGTCAGATGAAGATATTGATAAGAGGGCTGAGATTTTTATTAAT AATTTTCGACAGCAACTGTTAATCGAAAGGCAGGTTTCTTTGCAGCTGAGGTATTACAGAGGGAATAGTTTTGGTAGGGATTACTGA
AA sequence Show only first row Show all	>Potri.006G273500.1 pacid=42766906 polypeptide=Potri.006G273500.1.p locus=Potri.006G273500 ID=Potri.006G273500.1.v4.1 annot-version=v4.1 MGKQRWSAFGPLKRAVKKINFLLSFNFRKWRLASILSIASSSSSRRTGRLSFNDRIGLHGAIEDVESDHQKYKPVRTFERVRSYGSSDEDIDKRAEIFIN NFRQQLLIERQVSLQLRYYRGNSFGRDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57510			unknown protein		Potri.006G273500 [exp]	0	1
AT5G57510			unknown protein		Potri.006G273566 [exp]	1.00	0.9384
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.001G136200 [exp]	4.24	0.7780
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	4.47	0.8733
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	8.48	0.7875
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	10.39	0.8444
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	16.43	0.8001
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Potri.001G235800 [exp]	22.29	0.7954
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Potri.002G248900 [exp]	24.55	0.7261
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Potri.016G126400 [exp]	26.68	0.7039
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	29.98	0.7474	ATSEB1.1

Compare expression of checked genes

Potri.006G273500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.