Plant FIBer expression Database

Potri.006G273566 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57510 74 / 5e-18 unknown protein
AT5G56980 39 / 0.0004 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G273500
[exp]
229 / 4e-79 AT5G57510 75 / 4e-18 unknown protein
Potri.018G006800
[exp]
153 / 4e-49 AT5G57510 61 / 1e-12 unknown protein
Potri.018G094100
[exp]
89 / 8e-24 AT5G57510 107 / 5e-31 unknown protein
Potri.001G008080
[exp]
37 / 0.0003 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042441
[exp]
92 / 2e-24 AT5G57510 64 / 9e-14 unknown protein
Lus10026228
[exp]
90 / 1e-23 AT5G57510 62 / 6e-13 unknown protein
Lus10028472
[exp]
72 / 5e-17 AT5G57510 87 / 1e-22 unknown protein
Lus10033559
[exp]
71 / 1e-16 AT5G57510 84 / 1e-21 unknown protein
Lus10009171
[exp]
62 / 5e-13 AT5G57510 88 / 6e-23 unknown protein
Lus10017598
[exp]
61 / 3e-12 AT5G57510 80 / 6e-20 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05553 DUF761 Cotton fibre expressed protein
Representative CDS sequence
>Potri.006G273566.1 pacid=42767530 polypeptide=Potri.006G273566.1.p locus=Potri.006G273566 ID=Potri.006G273566.1.v4.1 annot-version=v4.1
ATGGGGAAGCAGAGGTGGTCAGCTTTCGGCCCTTTGAAGAGGGCAGTCAAGAAAATAAACTTTCTACTTAGCTTCAATTTCAGAAAGTGGCGATTGGCTT
CTATTCTTAGCATTGCGTCTTCTTCTTCCTCTAGAAGGACAGGGAGGTTGAGCTTTAATGATAGAATTGGATTGCATGGGGCAATTGAAGATGTTGAATC
AGATCATCAAAAGTACAAGCCAGTTCGAACATTTGAAAGGGTTAGAAGTTATGGCTCGTCAGATGAAGATATTGATAAGAGGGCTGAGATTTTTATTAAT
AATTTTCGACAGCAACTGTTAATCGAAAGGCAGGTTTCTTTGCAGCTGAGGTATTACAGAGGGAATAGTTTTGGAAGGGATTACTGA
AA sequence
>Potri.006G273566.1 pacid=42767530 polypeptide=Potri.006G273566.1.p locus=Potri.006G273566 ID=Potri.006G273566.1.v4.1 annot-version=v4.1
MGKQRWSAFGPLKRAVKKINFLLSFNFRKWRLASILSIASSSSSRRTGRLSFNDRIGLHGAIEDVESDHQKYKPVRTFERVRSYGSSDEDIDKRAEIFIN
NFRQQLLIERQVSLQLRYYRGNSFGRDY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57510 unknown protein Potri.006G273566
[exp]
0 1
AT5G57510 unknown protein Potri.006G273500
[exp]
1.00 0.9384
AT1G72790 hydroxyproline-rich glycoprote... Potri.001G198900
[exp]
7.07 0.7497
AT4G35070 SBP (S-ribonuclease binding pr... Potri.004G175500
[exp]
10.09 0.7384
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Potri.001G136200
[exp]
10.39 0.7309
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Potri.016G126400
[exp]
12.00 0.6922
AT2G27080 Late embryogenesis abundant (L... Potri.004G197600
[exp]
15.81 0.8107
AT2G42760 unknown protein Potri.004G059900
[exp]
17.00 0.7104
Potri.013G055800
[exp]
18.33 0.6533
AT3G54810 GATA GATA8, BME3, BM... GATA TRANSCRIPTION FACTOR 8, B... Potri.010G223300
[exp]
23.08 0.7137
AT4G07960 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, C... Potri.005G146900
[exp]
24.00 0.7580

Potri.006G273566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.