Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24530 415 / 1e-143 unknown protein AT4G31440 343 / 8e-116 unknown protein AT2G14850 160 / 5e-46 unknown protein AT4G33890 157 / 3e-44 unknown protein AT5G67410 79 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005700 [exp] 699 / 0 AT2G24530 443 / 8e-155 unknown protein Potri.001G037500 [exp] 273 / 8e-89 AT2G24530 236 / 2e-74 unknown protein Potri.003G187400 [exp] 263 / 4e-85 AT2G24530 229 / 7e-72 unknown protein Potri.009G090500 [exp] 214 / 7e-66 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 206 / 7e-63 AT4G33890 325 / 2e-110 unknown protein Potri.009G090400 [exp] 199 / 5e-60 AT4G33890 318 / 2e-107 unknown protein Potri.001G296200 [exp] 191 / 5e-57 AT4G33890 295 / 3e-98 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042444 [exp] 493 / 2e-174 AT2G24530 386 / 9e-133 unknown protein Lus10026942 [exp] 466 / 9e-164 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 465 / 2e-163 AT2G24530 346 / 4e-117 unknown protein Lus10026225 [exp] 441 / 2e-154 AT2G24530 347 / 1e-117 unknown protein Lus10002119 [exp] 177 / 9e-52 AT4G33890 297 / 2e-99 unknown protein Lus10011423 [exp] 108 / 3e-26 AT4G33890 294 / 3e-98 unknown protein Lus10011422 [exp] 95 / 4e-21 AT2G14850 278 / 5e-92 unknown protein Lus10002120 [exp] 67 / 2e-13 AT2G14850 112 / 2e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12767 [poplar] [flax] SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, subunit
Representative CDS sequence Show only first row Show all	>Potri.006G274800.1 pacid=42767470 polypeptide=Potri.006G274800.1.p locus=Potri.006G274800 ID=Potri.006G274800.1.v4.1 annot-version=v4.1 ATGCAACCTTATCAGAGCTCCAGAGTTGATTTGGTTGAATTGAGAACTCAAATAGTGAAGAAGGTTGGAGTTGAGAGATCAAAGAAGTATTTTTACTACT TGAATCGATTTTTGAGTCAGAAGCTGTGTAAGAGTGAGTTTGATAAGTCGTGTTTTCGCTTTCTTGGAAGGGAGAATCTACCACTGCACAATAATCTTAT ACGTTCAATATTGAAGAATGCCTGTCAAGTGAAGACGCCGCCACCAAGTTACGAGGCGGGTCCCACAAAATCTCCGATTCAAGCTTCAAAAAGCTCTCCT GTTAGAGAAGATGGGCATGAACAAATCGGGTCCCTTATTCCAAATCAAAGCGTGCCCATTCGGCCTAATGGGATCCTACCAGTGTCCCCAAAAAAGGTTA GGTCAGTGACACGTGATCAGAAGCTCAGAGATAGACCCAGTTCACTTGGACCCAATGGGAAAGTCGAATGTATCTCACATCGATCAATTGGTACAGAAGA TAATGGAAGTAAATTTGTAGTGGAAAATGGGGAATTGGCTCCTTGTGATTATCAGAGACCAGTGCAGCATCTTCCAACAGTTGCTGAACAACCTGAGAAT GAAAGGGAGGGTTCAGCTCAACGGCCCATCGAAAGACCAAGGACACAGAACAAAGATCAGACTGCTTTTGTGGAAGATAGAGATGAGGTGGAGCAGGCAA ACCACCTGAGCTTCTCTAGAAGTCCTCTACTTGCACCATTAGGGATTCCAAATTGTTCAGCTAGCATGGGTGGGGCCCGCAAAGCTATGCCAGTTGCAAG CAGTGGTGATTTCGTTAGCTATTATGACAGTGGTGGATTGTCTGATACAGAGATGCTGAGGAAACGCATGGAGCAGATTGCAGATGCGCAAGGTCTTGGA GGGGTCACGACAGAATGTGCAAACACGTTGAATAAGATGCTGGATGTGTACTTAAAGAGGTTGATCAAGTCATGCGTCAAGTTAGTAGGAGCACAGTCTC TGCGTGATCCAAGAAAGTACGCTGTTCACAAGCAGCAGGTACAGAACAAGGTTGTCAATGGCATGTGGCCAAGTAATCACTTGCATATGCAGAGTAGCAG TGGTCCTGTTGAGGGTGTGCAGGAGCAGAGGCCACATAGTTCAATATCTATGCTTGATTTCAAAGTTGCCATGGAGCTAAATCCACAGCAACTCGGTGAA GATTGGCCATTGCTGCTGGAGAAAATATGTATGCAGTCATTTGAGGATTGA
AA sequence Show only first row Show all	>Potri.006G274800.1 pacid=42767470 polypeptide=Potri.006G274800.1.p locus=Potri.006G274800 ID=Potri.006G274800.1.v4.1 annot-version=v4.1 MQPYQSSRVDLVELRTQIVKKVGVERSKKYFYYLNRFLSQKLCKSEFDKSCFRFLGRENLPLHNNLIRSILKNACQVKTPPPSYEAGPTKSPIQASKSSP VREDGHEQIGSLIPNQSVPIRPNGILPVSPKKVRSVTRDQKLRDRPSSLGPNGKVECISHRSIGTEDNGSKFVVENGELAPCDYQRPVQHLPTVAEQPEN EREGSAQRPIERPRTQNKDQTAFVEDRDEVEQANHLSFSRSPLLAPLGIPNCSASMGGARKAMPVASSGDFVSYYDSGGLSDTEMLRKRMEQIADAQGLG GVTTECANTLNKMLDVYLKRLIKSCVKLVGAQSLRDPRKYAVHKQQVQNKVVNGMWPSNHLHMQSSSGPVEGVQEQRPHSSISMLDFKVAMELNPQQLGE DWPLLLEKICMQSFED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24530			unknown protein		Potri.006G274800 [exp]	0	1
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.007G097100 [exp]	4.47	0.8264
AT2G24530			unknown protein		Potri.018G005700 [exp]	8.00	0.8226
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	11.61	0.7870
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	16.15	0.8034	SDG907,SUVH3.1
AT2G24530			unknown protein		Potri.003G187400 [exp]	18.33	0.7761
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.002G221500 [exp]	21.23	0.7802
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Potri.010G013700 [exp]	22.36	0.7677
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Potri.015G095500 [exp]	23.49	0.7982
AT2G22430	HD	ATHB6	homeobox protein 6 (.1)		Potri.005G071900 [exp]	23.95	0.7956
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	25.09	0.7836

Compare expression of checked genes

Potri.006G274800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.