Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VHA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24520 1589 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT4G30190 1568 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1564 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT3G42640 1548 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G80660 1538 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT5G57350 1535 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT2G07560 1532 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT5G62670 1485 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1479 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT3G60330 1327 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006000 [exp] 1724 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.006G165900 [exp] 1642 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G090300 [exp] 1638 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G188600 [exp] 1564 / 0 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1557 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.018G112400 [exp] 1549 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.015G066000 [exp] 1489 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.012G071600 [exp] 1486 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.003G179800 [exp] 1437 / 0 AT1G80660 1463 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026946 [exp] 1657 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1617 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10024105 [exp] 1549 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10042445 [exp] 1509 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026224 [exp] 1506 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10003259 [exp] 1477 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1477 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10004370 [exp] 1379 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10040166 [exp] 1379 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10019593 [exp] 1344 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G275000.1 pacid=42767378 polypeptide=Potri.006G275000.1.p locus=Potri.006G275000 ID=Potri.006G275000.1.v4.1 annot-version=v4.1 ATGTCCAGCAAGGGCGGCATCAGTCTTGAAGAGATCAAAAATGAGTCTGTTGATCTGGAGAGGATTCCCATGGAGGAAGTGTTTGAGCAGCTGAAATGCA CAAGAGAAGGTCTGTCGGCAGACGAAGGAGCCAGCAGGCTTCAAGTGTTTGGACCAAACAAACTAGAAGAGAAAAAGGAGAGCAAGATTCTCAAGTTTCT GGGATTTATGTGGAATCCATTGTCATGGGTCATGGAAGCTGCTGCATTGATGGCCATAGCCTTGGCTAATGGTGATGGAAGACCTCCAGATTGGCAGGAT TTTGTTGGGATTGTTGTGTTGTTGGTGATTAACTCCACTATTAGTTTCATAGAGGAAAACAATGCTGGTAATGCAGCAGCAGCCCTCATGGCTGGTCTTG CTCCTAAGACTAAGGTTCTGAGAGATGGCCGATGGAGCGAGCAAGATGCTTCAATCTTGGTTCCAGGAGATATTATCAGCATTAAATTGGGAGACATCGT TCCAGCTGATGCTCGTCTTCTCGAGGGTGATCCTTTAAAGATTGATCAATCTGCCCTTACTGGGGAGTCACTTCCTGTCACCAAGAACCCTTCTGATGAA GTGTTTTCTGGCTCAACATGTAAACAAGGTGAAATTGAAGCAGTTGTGATTGCCACTGGTGTGCACACCTTTTTCGGTAAGGCTGCCCATCTTGTGGACA GCACCAATCAAGTTGGACATTTCCAGAAAGTTCTTACTGCCATTGGTAATTTCTGTATTTGCTCAATTGCTGTTGGAATAATCGCCGAGCTTATAGTGAT GTACCCTATACAACATCGCAAGTACAGAGATGGAATTGACAACTTGCTGGTTCTCTTGATTGGAGGAATTCCTATTGCTATGCCTACTGTTTTATCTGTC ACCATGGCTATTGGTTCCCACAGACTTTCTCAACAGGGTGCTATTACCAAGAGAATGACTGCCATCGAGGAAATGGCAGGAATGGATGTTCTTTGCAGTG ACAAAACTGGGACTCTAACTCTGAACAAGCTTACTGTTGATACGAGCTTGATTGAAGTGTTTGCAAAGGGTGTGGAGAAGGAGCATGTTATGCTTCTTGC AGCAAGAGCTTCAAGGACTGAAAATCAGGATGCTATTGATGCTGCGATTGTAGGGATGCTTGCAGACCCGAAGGAGGCACGAGCTGGGATCAGAGAGGTT CATTTCCTTCCATTCAACCCTGTGGACAAGAGGACTGCTCTGACCTACATTGATTCTGATGGAAACTGGCACCGGGCTAGCAAGGGTGCCCCCGAGCAGA TATTAACTCTGTGCAATTGCAAGGAAGATGTTAAGAAGAAGGTTCATTCTGTGATTGACAAGTTTGCTGAACGTGGACTTAGATCTTTAGGTGTTGCAAA ACAGGAAGTACCTGAGAAATCAAAAGATGCTGCAGGTGCACCATGGCAGCTAGTTGGTTTGTTGCCTTTGTTTGATCCTCCCAGGCATGACAGTGCTGAA ACCATCAGAAGAGCTCTCCACCTTGGTGTTAATGTTAAGATGATTACTGGGGATCAGCTTGCAATTGGCAAGGAAACTGGCAGGAGGCTTGGAATGGGAA CAAACATGTATCCCTCTTCTGCATTGCTCGGCCAAGACAAAGATGCTTCTATTGCGGCTCTCCCTGTGGATGAGTTGATTGAAAAGGCCGATGGATTTGC TGGAGTTTTTCCAGAACACAAATATGAAATTGTGAAGAGGCTACAGGAGAGGAAGCACATCTGTGGAATGACAGGAGATGGTGTTAATGATGCCCCTGCT CTGAAGAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACTGATGCTGCCAGAGGTGCTTCTGACATTGTCCTCACTGAACCAGGACTTAGTGTTATTA TAAGTGCAGTGCTGACCAGCAGGGCTATATTCCAAAGGATGAAGAATTACACTATATATGCAGTTTCAATTACCATTCGTATTGTCTTTGGCTTCATGTT TATTGCCCTGATATGGAAGTTTGACTTCGCTCCATTCATGGTTTTGATTATTGCTATTCTAAATGATGGAACGATCATGACAATATCAAAGGATCGAGTG AAGCCATCCCCACAGCCCGATAGTTGGAAACTTAAAGAGATATTTAGTACTGGCATTGTGCTTGGAGGTTACATGGCACTGATGACAGTATTATTCTTCT GGATTATGAAAGACACCGACTTCTTTTCAGATAAGTTTGGTGTCAGGTCACTGAGAAATAACGATAAGGAAATGATGGCAGCCTTGTATTTACAAGTGAG TATCGTGAGCCAGGCACTTATTTTTGTCACAAGATCTCGCAGCTGGTCTTTTGTTGAACGTCCTGGATTCCTTCTCCTTGGTGCATTTGTAGCTGCTCAG CTGGTCGCAACATTGATAGCGGTCTATGCAAATTGGGGTTTTGCACGTATTGAGGGGTGTGGCTGGGGATGGGCTGGAGTAATCTGGCTATTTAGCGTGG TGACATATGTGCCGCTTGATATCCTCAAATTCGCAATCCGCTACATTTTGAGTGGGAAGGCTTGGGATAATCTCTTGGAGAACAAGACTGCCTTTACTAC AAAGAAAGACTACGGCAAAGAAGAGAGAGAAGCTCAGTGGGCCACAGCACAGAGGACCCTCCATGGCCTTCAACCTCCTGAGACCTCCCACAATATGTTT TCTGAAAAGAATAGTTACAGGGAGCTTTCTGAGATCGCCGAGCAAGCCAAGCGGAGGGCTGAGATGGCAAGGCTGAGGGAGCTAAACACCCTCAAGGGGC ATGTTGAATCAGTGGTGAAGCTGAAGGGACTGGACATTGATACAATTCAACAACACTACACAGTTTAA
AA sequence Show only first row Show all	>Potri.006G275000.1 pacid=42767378 polypeptide=Potri.006G275000.1.p locus=Potri.006G275000 ID=Potri.006G275000.1.v4.1 annot-version=v4.1 MSSKGGISLEEIKNESVDLERIPMEEVFEQLKCTREGLSADEGASRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDGRPPDWQD FVGIVVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDASILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDE VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIIAELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSV TMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDTSLIEVFAKGVEKEHVMLLAARASRTENQDAIDAAIVGMLADPKEARAGIREV HFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQILTLCNCKEDVKKKVHSVIDKFAERGLRSLGVAKQEVPEKSKDAAGAPWQLVGLLPLFDPPRHDSAE TIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPA LKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRV KPSPQPDSWKLKEIFSTGIVLGGYMALMTVLFFWIMKDTDFFSDKFGVRSLRNNDKEMMAALYLQVSIVSQALIFVTRSRSWSFVERPGFLLLGAFVAAQ LVATLIAVYANWGFARIEGCGWGWAGVIWLFSVVTYVPLDILKFAIRYILSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETSHNMF SEKNSYRELSEIAEQAKRRAEMARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	0	1	Pt-VHA1.2
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140600 [exp]	1.73	0.9069
AT4G27810			unknown protein		Potri.015G011900 [exp]	2.44	0.9007
					Potri.001G077280 [exp]	8.06	0.8842
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	8.36	0.8771
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	12.24	0.8017
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022600 [exp]	13.26	0.8691
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G223600 [exp]	15.29	0.9000	PT1.5,PtrPHT1-7
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020500 [exp]	16.73	0.8567	Pt-IFS1.50,CYP81B7
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.004G149500 [exp]	18.65	0.8659
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	21.35	0.8766	PDS1.2

Compare expression of checked genes

Potri.006G275000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.