Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AJH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22920 565 / 0 CSN5A, JAB1, AJH1 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) AT1G71230 559 / 0 CSN5B, AJH2 COP9-signalosome 5B (.1) AT5G23540 135 / 6e-37 Mov34/MPN/PAD-1 family protein (.1.2) AT1G80210 55 / 5e-08 BRCC36A, AtBRCC36A BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) AT3G06820 53 / 2e-07 BRCC36B, AtBRCC36B BRCA1/BRCA2-containing complex 36 homolog B, Mov34/MPN/PAD-1 family protein (.1.2) AT1G10600 42 / 0.0003 AMSH2 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006100 [exp] 679 / 0 AT1G22920 589 / 0.0 ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A (.1.2) Potri.014G032900 [exp] 135 / 7e-37 AT5G23540 563 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.002G127900 [exp] 135 / 1e-36 AT5G23540 567 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Potri.001G172800 [exp] 45 / 5e-05 AT1G80210 484 / 2e-170 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026947 [exp] 627 / 0 AT1G71230 597 / 0.0 COP9-signalosome 5B (.1) Lus10020149 [exp] 466 / 3e-162 AT2G07560 469 / 1e-155 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) Lus10035470 [exp] 135 / 1e-36 AT5G23540 601 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10031085 [exp] 135 / 2e-36 AT5G23540 599 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10021746 [exp] 134 / 2e-36 AT5G23540 618 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10042663 [exp] 134 / 2e-36 AT5G23540 616 / 0.0 Mov34/MPN/PAD-1 family protein (.1.2) Lus10007893 [exp] 48 / 7e-06 AT1G80210 240 / 4e-76 BRCA1/BRCA2-containing complex 36 homolog A, Mov34/MPN/PAD-1 family protein (.1.2) Lus10030875 [exp] 41 / 0.001 AT1G10600 311 / 2e-108 associated molecule with the SH3 domain of STAM 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0366 [poplar] [flax] JAB PF01398 [poplar] [flax] JAB JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Representative CDS sequence Show only first row Show all	>Potri.006G275100.1 pacid=42769384 polypeptide=Potri.006G275100.1.p locus=Potri.006G275100 ID=Potri.006G275100.1.v4.1 annot-version=v4.1 ATGGATCCCTACCCTTCTTCTTCCATAGCCAAAAAGACCTGGGAACTCGAAAACAACATAATACCTATCGACACAGCAACCCCGACAACAACAGACACTT CTTCTTCTTCTTCTTCATCGGACGCGATTTTTTACTTCGATGAAGCAGCACAAGCGAAGTTCCAGAAAGAAAAACCGTGGTCTAATGATCCGAATTATTT TAGAAGAGTGAAGATATCTGCACTTGCGTTGTTGAAGATGGTTGTACATGCTCGATCAGGTGGGACTATTGAAGTTATGGGATTAATGCAAGGGAAAACT GATGGGGATTCTATAATTGTTATGGATGCCTTTGCTCTTCCTGTTGAAGGGACTGAGACGAGAGTTAATGCTCAAGCTGATGCTTATGAGTATATGGTTG ATTATTCTCAGACTAATAAACAGGCTGGACGTTTGGAGAATGTAATTGGGTGGTATCATTCACATCCTGGCTATGGATGCTGGCTTTCGGGTATTGATGT TTCAACCCAAATGCTTAACCAGCAATTTCAGGAGCCGTTTTTGGCAGTTGTTATTGATCCAACAAGAACTGTCTCAGCTGGGAAAGTAGAGATTGGGGCA TTCAGGACATATCCAGAAGGATACAAACCTCCAGATGATCCTGTTTCTGAATATCAAACTATTCCTCTTAATAAGATCGAAGACTTTGGAGTCCATTGCA AACAGTATTATTCTTTGGACATCACATATTTCAAGTCTTCTCTTGATTGTCACCTCTTGGATCTTTTGTGGAACAAATACTGGGTGAATACGCTTTCATC TTCACCTCTCTTGGGTAATGGAGACTATGTTGCAGGACAAATTTCTGATTTAGCTGAGAAGCTGGAGCATGCAGAGAATCAATTGGCACATTCTCGATTG GGACCATTAATGACTCCTCAAAGAAAGAAAGATGAAGAATCTCAACTTGCTAAAATTACTCGTGATAGTGCTAAGATAACTGTGGAGCAAGTTCATGGCC TAATGTCGCAGGTTATCAAGGACATCTTGTTCAACTCCGTTCATCAATCAAACAGATCTCAGACGGAGCCATCTGGCCCTGAACCAATGGTTGAAACCTG A
AA sequence Show only first row Show all	>Potri.006G275100.1 pacid=42769384 polypeptide=Potri.006G275100.1.p locus=Potri.006G275100 ID=Potri.006G275100.1.v4.1 annot-version=v4.1 MDPYPSSSIAKKTWELENNIIPIDTATPTTTDTSSSSSSSDAIFYFDEAAQAKFQKEKPWSNDPNYFRRVKISALALLKMVVHARSGGTIEVMGLMQGKT DGDSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGA FRTYPEGYKPPDDPVSEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEHAENQLAHSRL GPLMTPQRKKDEESQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQSNRSQTEPSGPEPMVET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.006G275100 [exp]	0	1	Pt-AJH1.2
AT4G04190			unknown protein		Potri.009G146100 [exp]	1.73	0.8878
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	2.82	0.8296
AT4G32605			Mitochondrial glycoprotein fam...		Potri.010G244500 [exp]	3.87	0.8051
AT5G27990			Pre-rRNA-processing protein TS...		Potri.013G035000 [exp]	7.34	0.8116
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Potri.001G072100 [exp]	7.93	0.7993
AT5G62290			nucleotide-sensitive chloride ...		Potri.015G129900 [exp]	8.77	0.8012
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Potri.002G164800 [exp]	9.48	0.8013
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	12.48	0.7889	PBD2.2
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.007G071400 [exp]	17.54	0.8107
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.005G076700 [exp]	19.62	0.7629

Compare expression of checked genes

Potri.006G275100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.