Plant FIBer expression Database

Potri.006G275200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31430 157 / 2e-41 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G006200
[exp]
780 / 0 AT4G31430 148 / 4e-38 unknown protein
Potri.010G244700
[exp]
52 / 1e-06 AT3G10650 353 / 8e-102 unknown protein
Potri.008G014800
[exp]
50 / 4e-06 AT3G10650 379 / 1e-110 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034137
[exp]
55 / 2e-07 AT3G10650 323 / 2e-92 unknown protein
Lus10028861
[exp]
46 / 0.0001 AT3G10650 436 / 2e-131 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G275200.1 pacid=42767296 polypeptide=Potri.006G275200.1.p locus=Potri.006G275200 ID=Potri.006G275200.1.v4.1 annot-version=v4.1
ATGTCCGCCATTTCCCGGCCTCCGAATCGACTCACTGAGTTCAAATCAGGTGGAAAAATCGTTCGACCCAGGCGAACCACTACCCGTCCCACTCCATACG
ACCGACCTACTCCTCGCCTTTCCCCTATTTCCACTCCTCAAAACCCTAATTGGCTTTCTCGTTTCATTTTATCTCCTTCTCGTATACTTGCTACCGGTGC
CGGAAAAGTCTTCTCCACCGTCTTCGGCTCTGAATCCTCCGCTTCCTCCTCCTCCTCCTCCGATGTCGACGAAGAAGAAGAAGGCGATTCCGGTTCTACT
TCCGAGGGTGAAATGGAAGACGTCAATGACGGCAATGGTTCTTCTCAAAGTGATGAAAAGGAGAATCAGACAACTGAAATTGTTAATTACTCGAAGAAAG
ATCTCCCTGCTGTGGAGTGGAAGACTGCGACATTACGTGTAATTGCACAGCTTCTAATGCAGGAAACGTTCTCGAGGGAAGAATGCGACAGACTAACACA
TATTATTAAATCGAGAGTTGTAGATTCTCCCATCACTGGAAGCACAAAAGATGGGAGGCCGAGTAAGACTCTGGACAAGACAGTTGGCAATGATGTTGAT
ACACCTGATATCTGCAATACAGCTGTTACAGAGGCCAAAAAATGGTTTGAGGGAAAGAAATTGGGGTCCAATTCAAAGTCAGTGGAGTATGGAACCTGCA
TTTTGAACACTGCTCCACATGCTACTGAAGGAGAAATGGGTTCACCAGTGGATTTGGCCAAATCTTACATGCGAGAGCGTCCACCTTGGGCTTCTCCTTC
CACAAACCACATCCAATTGCAATCACCGCCATCAATGGGAAAAGAGCTTTTTGTGGAAGCAACACCATTTTCAGTCAGTGGCAAGTCATTGTCCCAATCA
AAGTTGAACAGGGATTTCCTGGTCACTGGTTCATGGAATATCCAAGAGGAACTACGTAAAGTGAGATCCAGGGCAACTGAAGAGATGCTGAGGACTCGAC
CGTCTTCCAAAATGGATTGGTCTGCATTAGCTTCAGCTTATAAAGGAGGCCCTAGTGTATTGGGGGCTGGAGAATTTAGTGGTGCTAAAAATAAACTTTC
CAACTTCACACAATTAATAGATGTACCTTTGAAGTGGGGAAGTGCAGCAAATAATTCTGGCTTAACAGATACTCAGATGGCACAAGTTAGGTTGCAGAAA
GATGATTTTTCACCTAATGCAGCTACTTCTGTTCCCGAAAAAAGTCAGGGTCTGGGATTAACACCGACCACTGAGGGAATGGCAGGATTGCGGGATGGCT
CTGAAGGGATATCAAGCCATGAACAACAGCAGCTTCCAGAAGAAGTGATAGTAAAACAAAGTGCTGATGCTGTCATTGCCAATGCCCCCAGAGACATTGA
GGAGACTAGCCACCCTTTGAGCTCTAGAATGGAAAGAACTGTACAAGGCAAGAGTTTTAAATCTGATTCAATGTTACTTGAAGTAAATTTTTCAGCGTCC
AAGGAAGTTGCTGGAGAAGTTGCTGGAAGAGACGATTCAGTTACTGTCAACGGCTTCCCTTCTTCAGCATCCAGTTTGCCCGAGGCACAGGAAAGAGAAC
AAAAGTCTATGCCGTGTGGTGAAGAGCACAATCCAGTTGGTCCAGATCATGACAAGATGACAAGAACTGCTCCTGCCGAGGAAACCTGCAAGCTACTGAG
TGAGGCTTCCATGGAAGTGCCAAACGTAAATGAAAATGATAGTGTTGCTACTGACTCCCAAGACAGCTCTAGCATGCACCAAGAAGGATCGCTGCAGGCT
CAGGCTCTGGCTCAACCAAATCCAAAACGCGGCTTGGGATCCAGGACAACTGGTGTCAGTGAGAAGCAGCAAGGAAGAATCGTGAGCAGCAGATACAACA
AGAGAGGCAGGGGACGGGGTAAATAA
AA sequence
>Potri.006G275200.1 pacid=42767296 polypeptide=Potri.006G275200.1.p locus=Potri.006G275200 ID=Potri.006G275200.1.v4.1 annot-version=v4.1
MSAISRPPNRLTEFKSGGKIVRPRRTTTRPTPYDRPTPRLSPISTPQNPNWLSRFILSPSRILATGAGKVFSTVFGSESSASSSSSSDVDEEEEGDSGST
SEGEMEDVNDGNGSSQSDEKENQTTEIVNYSKKDLPAVEWKTATLRVIAQLLMQETFSREECDRLTHIIKSRVVDSPITGSTKDGRPSKTLDKTVGNDVD
TPDICNTAVTEAKKWFEGKKLGSNSKSVEYGTCILNTAPHATEGEMGSPVDLAKSYMRERPPWASPSTNHIQLQSPPSMGKELFVEATPFSVSGKSLSQS
KLNRDFLVTGSWNIQEELRKVRSRATEEMLRTRPSSKMDWSALASAYKGGPSVLGAGEFSGAKNKLSNFTQLIDVPLKWGSAANNSGLTDTQMAQVRLQK
DDFSPNAATSVPEKSQGLGLTPTTEGMAGLRDGSEGISSHEQQQLPEEVIVKQSADAVIANAPRDIEETSHPLSSRMERTVQGKSFKSDSMLLEVNFSAS
KEVAGEVAGRDDSVTVNGFPSSASSLPEAQEREQKSMPCGEEHNPVGPDHDKMTRTAPAEETCKLLSEASMEVPNVNENDSVATDSQDSSSMHQEGSLQA
QALAQPNPKRGLGSRTTGVSEKQQGRIVSSRYNKRGRGRGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31430 unknown protein Potri.006G275200
[exp]
0 1
AT1G73460 Protein kinase superfamily pro... Potri.012G039700
[exp]
2.00 0.8496
AT3G16890 PPR40 pentatricopeptide (PPR) domain... Potri.008G108300
[exp]
4.24 0.8444
AT1G09730 Cysteine proteinases superfami... Potri.007G115400
[exp]
5.00 0.8496
AT4G10710 SPT16 global transcription factor C ... Potri.013G004500
[exp]
5.56 0.8620 GTC903
AT3G05380 MYB ALY2, ATALY2 ARABIDOPSIS THALIANA ALWAYS EA... Potri.013G020500
[exp]
7.21 0.8603
AT1G03750 SWI2, SNF2, CHR... CHROMATIN REMODELING 9, switch... Potri.017G012400
[exp]
7.48 0.8367 CHR912
AT1G18950 DDT domain superfamily (.1) Potri.012G072200
[exp]
8.83 0.8570
AT4G13730 Ypt/Rab-GAP domain of gyp1p su... Potri.017G057100
[exp]
16.24 0.8302
AT1G09730 Cysteine proteinases superfami... Potri.017G044000
[exp]
16.94 0.8411
AT1G10270 GRP23 glutamine-rich protein 23 (.1) Potri.003G002950
[exp]
17.54 0.8265

Potri.006G275200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.