Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10630 756 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT5G60390 286 / 2e-88 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 286 / 2e-88 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 286 / 2e-88 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 286 / 2e-88 GTP binding Elongation factor Tu family protein (.1) AT1G18070 283 / 3e-86 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT4G20360 134 / 3e-33 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 126 / 1e-30 GTP binding Elongation factor Tu family protein (.1) AT2G31060 75 / 1e-13 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G45332 73 / 4e-13 Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G006500 [exp] 966 / 0 AT5G10630 757 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Potri.019G062500 [exp] 291 / 1e-89 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.010G219500 [exp] 289 / 1e-89 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 289 / 1e-89 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 289 / 1e-89 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 289 / 1e-89 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 288 / 2e-89 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 288 / 2e-89 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 288 / 3e-89 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026952 [exp] 902 / 0 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020153 [exp] 784 / 0 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026953 [exp] 362 / 9e-117 AT5G10630 327 / 1e-104 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10019918 [exp] 290 / 9e-90 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10023497 [exp] 288 / 3e-89 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10040378 [exp] 288 / 3e-89 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10041996 [exp] 289 / 7e-89 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018000 [exp] 289 / 5e-88 AT1G18070 792 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10023174 [exp] 268 / 6e-82 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 251 / 1e-75 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [poplar] [flax] PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G275500.7 pacid=42770045 polypeptide=Potri.006G275500.7.p locus=Potri.006G275500 ID=Potri.006G275500.7.v4.1 annot-version=v4.1 ATGCCTCGTAAAGGGAATTACGGATTTGATTATGATGATTACGACGATTATGACTATGACTATGATGTAGAAGATCAAGTTGAAGCACCTGAGCCTAAGA AAAAAACGAGTAGTGATAAGGTTCGGGTATGGAGTTGCCCGATTTGCACTTATGATAATGATGAGAGTATGTCTGCATGTGATATTTGCGGTGTTATTCG AAGTTCTGTCCCTGGAAAACTCAAGGATGACAAGGGAACAGTTGGCATTATATGCAAAGATTCTGGAGTATCCATTATGGCCAAGTCTCTTTTTGCATCA TTGCCACATCAGACACCACAAAAGGCTGTAGTAGCTCAGCGGCGGAATGATGATTTTGTGACAGAGGAGGGCAATAACTTCCAAAAGCTTGGGAATTTCC AAGGAAAATTTGATGAATTCCATAAGGCTTTTAGTCCCCATAACCGCTCCCATTTTGATATAGCTCCTTTCAAGTTTGATTTCCCATCTCCAGATGACAT GGTTTCTAAGGGGCTACGATCCTCCAAAATTGGATCTAAAGCCAACCTTATTAACTCCAGATCTCAAAATGCATCTGCTGGCATTTCTGAGACTGTTAAA AGTTCAGATAAATCATCTGCCTCAATCCCAAAAGGCAAACAAGGTAACATGGATGACAGCAATCATTTAATGAATGGAGCTCCGCGACCAAGTTGCAAAA GTTCTGATAGTTCTTCTGCTTCTATTTCAAAAGGCAGGCCTGGTGTTGATGAGGGCAATCATAACAAGAATGGCGTAGTTGACACTCAATCAAGGGATGA AATTTCAGATAGCACATCTTCATTGATGCCGAAGGCCAAAGATAAAAGTGTTGGTTATAGCAGTTCTTCAATAAATGGGGGCAAGTCTCTTGGTCTTACA AGTAATTTGAATGACATGTCTTTGTCTGATAAATCTGGAAACTCAAATAAGGCTAGTGCCAAGAGGCCTAAGTCATCTGCACAATATCAACCTGATAAAT GGATGCTCCCAGACAAATCAGAAAATGCTTTGACACAACTGAATCTTGCTATTGTTGGCCATGTTGATTCTGGCAAATCAACACTCTCAGGTAGACTGCT ACATCTTTCGGGACGGATAACCCAAAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGGTCATTCGCTTATGCTTGGGCATTGGAT GAGAGTCCTGAAGAAAGGGAAAGGGGAATAACTATGACAGTCGCTGTTGCTTATTTTGATTCCAAAAAATATCATGTTGTTGTGCTTGATTCCCCAGGCC ATAAAGACTTTGTCCCAAACATGATATCTGGCGCAACACAAGCCGATGCTGCCATCCTTGTTATAGATGCCTCCATTGGGGGTTTTGAAGCTGGAATGGA CAGCAAAGGGCAAACTAGGGAACATGCACGTCTTATTAGAAGTTTTGGGGTTGACCAAATCATTGTCGCAGTTAACAAAATGGACTCAGTAGAGTACTCC AAAGACCGATTTGATTTGATTGGAACACAACTTGGAACATTTCTTCGTTCTTGTGGATTCAAGGATTCCTTGGTGTCATGGATTCCGTTGAGTGCAGTGG AAAATCAAAATTTAGTTGCAGCTCCTTCTGATGTTCGTTTATCATCCTGGTACCATGGATCTTATCTGTTGGATGCAATTGATTCTCTTCAGCCACTGAA GAGAGATTTCTCAAAACCTCTTCTCATGCCCATATGTGATGTAGTTAAATCATCTTCACAAGGGCAGGTGTCAGCCTGCGGTAAACTGGAGGCTGGTGCT CTTCGGAGTGGATTGAAGGTTTTAGTTATGCCATCAGGAGATGTGGGGACAGTACGCACCCTAGAACGGGACTCTCAGATTTGTGCAGTCGCAAGAGCAG GAGATAATGTGACTGTCAGTCTCCAAGGCATTGATGGAAGTAATGTGATGGCTGGGGGTGTTCTATGTCATCCTGACTTTCCTGTTGCAGTTGCAAAACA TTTTGAGCTGAAAGTGCTCGTCTTAGATTTTTTGACAATCCCAATTGTCATTGGCTCTCAATTGGAATTCCACATACACCATGCAAAGGAGGCTGCAAGA GTTGTTAAAATAATATCAGTGCTTGATCCAAAGACCGGCAAGGTGTCAAAGAAGGCACCTCGCTGTCTTACCTCAAAGCAGAGTGCCATAATCGAGGTGG CTTTGGATGGACCAGTTTGTGCGGAAGAGTTCACGAATTGCAGGGCTCTTGGAAGGGCCTTTTTGAGAACATTAGGGAAAACCGTTGCCGTCGGAATTGT AACAAGGATAATTGAGGATCAGGAATAG
AA sequence Show only first row Show all	>Potri.006G275500.7 pacid=42770045 polypeptide=Potri.006G275500.7.p locus=Potri.006G275500 ID=Potri.006G275500.7.v4.1 annot-version=v4.1 MPRKGNYGFDYDDYDDYDYDYDVEDQVEAPEPKKKTSSDKVRVWSCPICTYDNDESMSACDICGVIRSSVPGKLKDDKGTVGIICKDSGVSIMAKSLFAS LPHQTPQKAVVAQRRNDDFVTEEGNNFQKLGNFQGKFDEFHKAFSPHNRSHFDIAPFKFDFPSPDDMVSKGLRSSKIGSKANLINSRSQNASAGISETVK SSDKSSASIPKGKQGNMDDSNHLMNGAPRPSCKSSDSSSASISKGRPGVDEGNHNKNGVVDTQSRDEISDSTSSLMPKAKDKSVGYSSSSINGGKSLGLT SNLNDMSLSDKSGNSNKASAKRPKSSAQYQPDKWMLPDKSENALTQLNLAIVGHVDSGKSTLSGRLLHLSGRITQKEMHKYEKEAKLQGKGSFAYAWALD ESPEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASIGGFEAGMDSKGQTREHARLIRSFGVDQIIVAVNKMDSVEYS KDRFDLIGTQLGTFLRSCGFKDSLVSWIPLSAVENQNLVAAPSDVRLSSWYHGSYLLDAIDSLQPLKRDFSKPLLMPICDVVKSSSQGQVSACGKLEAGA LRSGLKVLVMPSGDVGTVRTLERDSQICAVARAGDNVTVSLQGIDGSNVMAGGVLCHPDFPVAVAKHFELKVLVLDFLTIPIVIGSQLEFHIHHAKEAAR VVKIISVLDPKTGKVSKKAPRCLTSKQSAIIEVALDGPVCAEEFTNCRALGRAFLRTLGKTVAVGIVTRIIEDQE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.015G146700 [exp]	5.47	0.7510
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	5.47	0.7969
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	7.34	0.7406	Pt-PP1.5
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	8.00	0.7952
AT3G28430			unknown protein		Potri.006G073600 [exp]	14.42	0.7434
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Potri.012G095500 [exp]	15.00	0.7051
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	16.00	0.7179
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	21.00	0.7327
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Potri.019G081100 [exp]	21.21	0.6759
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Potri.009G162600 [exp]	26.07	0.7362

Compare expression of checked genes

Potri.006G275500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.