Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31390 1059 / 0 Protein kinase superfamily protein (.1.2) AT1G79600 379 / 5e-122 Protein kinase superfamily protein (.1) AT1G71810 332 / 3e-104 Protein kinase superfamily protein (.1) AT3G24190 333 / 1e-103 Protein kinase superfamily protein (.1) AT5G24970 306 / 2e-93 Protein kinase superfamily protein (.1.2) AT2G39190 259 / 1e-75 ATATH8 Protein kinase superfamily protein (.1.2) AT5G64940 218 / 3e-61 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT3G07700 205 / 6e-57 Protein kinase superfamily protein (.1.2.3) AT5G05200 173 / 1e-46 Protein kinase superfamily protein (.1) AT5G24810 143 / 3e-35 ABC1 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G000100 [exp] 369 / 3e-118 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.002G061000 [exp] 333 / 4e-104 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 328 / 1e-101 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 290 / 6e-88 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G221000 [exp] 281 / 7e-84 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G082500 [exp] 227 / 2e-64 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.005G083200 [exp] 219 / 2e-61 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.014G168600 [exp] 198 / 3e-54 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.019G061300 [exp] 157 / 4e-41 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020152 [exp] 1040 / 0 AT4G31390 1041 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026952 [exp] 893 / 0 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 374 / 2e-119 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10017924 [exp] 327 / 6e-102 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 300 / 2e-91 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10032616 [exp] 297 / 1e-86 AT3G23940 1162 / 0.0 dehydratase family (.1.2) Lus10043132 [exp] 295 / 4e-86 AT3G23940 1148 / 0.0 dehydratase family (.1.2) Lus10036522 [exp] 284 / 8e-85 AT2G39190 940 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037291 [exp] 261 / 2e-77 AT1G79600 759 / 0.0 Protein kinase superfamily protein (.1) Lus10041406 [exp] 254 / 3e-74 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF03109 [poplar] [flax] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Potri.006G275600.2 pacid=42767811 polypeptide=Potri.006G275600.2.p locus=Potri.006G275600 ID=Potri.006G275600.2.v4.1 annot-version=v4.1 ATGGACTTGATTTACTATCCAAATTACACAATAACCCCTTCCCTTTCCTCTCAAAATCCAAAACCTCGCTCTTGGATTATCCTCCAAAGAAGCAACTTCC GATCATCTCCAATTCGCGCTGCTGCTGCTTCTTCCAATGTCGAAACCACCAAAAACGGCTCCGCTTCAACAACAACCAGGAGAAACGTAACAGTAAAAAC AACTGACAGGGGCAGCAGCAGCGCCATGGATCAACTCGACATCGAACGCGGCGTTTGCGTGCCGTTTCGCAAGTACTCTCCCGAAACAGTGAGGAGTAAA GTGCTGGAATCGAGAGGGGCAATATCGTCGTTGATGTTGAGAGGAGTGGAGATAGTGTGGAATTTGGGACTGTATTGGTCTAATCTGGCGTATGATTTTT TGGTTGGAAGAGATGAGGAGGTGGTTCCGTATCGTGCTCGGCAGCTTAGGAATTTGTTGTGTGATTTAGGACCTTCTTTCATCAAAGCTGGACAGGTTCT TGCTAGTAGACCTGATATCATTAGAGAGGATTATATGAATGAACTCTGCATCCTCCAAGATGATGTTCCTCCTTTCCCCAATCAGGTTGCTTTCAATATT ATAGAAGAGGAGTTGGGGCAACCGCTTGAAGCTGTATTCAGTAAGATTTCACCACAAACAATAGCAGCTGCGAGCTTGGGTCAAGTTTACCGAGCTACCT TACGAGCTACTGGGGAGGATGTTGCAATTAAGGTGCAAAGACCTCGAATAGAGCCTATAATCTTTCGGGATCTTTTTCTCTTTAGAACTCTTGCTTCATT CCTAAATGGAATCAGTTTACAGAAATTGGGATGCAATGCTGAGCTGATAGTAGATGAATTTGGTGAGAAGCTTTTGGAGGAGCTTGATTACACCTTGGAA GCTCGGAATATTGAAGACTTCCTGGAAAACTTCAAAGATGATCCTACTGTTAAAATTCCTCGGGTTTACAGAAAACTTTCTGGTTCACGTGTTTTAGTTA TGGAATGGATAGATGGCATTCGATGCACCAACCCACAGGCTATCAGGGATGCTGGTATTGATTTAAATGGATTTTTAACAGTTGGGGTGAGTGCTGCTTT GCGGCAATTATTAGAGTTTGGGTTATTTCATGGAGATCCGCATCCTGGAAATATCTTTGCCATGCGAGATGGACGCATTGCTTATGTGGACTTTGGGAAT GTTGCTGTGCTTAGTCAGCAAAATAAGCAGATATTGATTGATGCTGTTGTTCATGCTGTGAACGAGGACTATGCTGAGATGGCAAATGACTTTACCAGGC TTGGGTTCCTAGCTAGTGACACTGATGTTGCTCCTATCATTCCAGCTTTGGAAGCTATTTGGCAGAATTCTGCTGGGAAAGGACTTGCTGATTTTAATTT CAGAACTGTTACAGGGAAATTTAATCAATTGGTTTACAATTATCCCATTCGTATACCAGAGAGGTTTTCCCTTGTTATTCGTTCTTTATTGACTCAAGAG GGCATCTGTCTTACCTTGGAGCCAGATTTTAAATTTCTTGAGGTTGCCTATCCATATATTGCAAAACGCCTCCTTACAGATCCCAATCCAGCACTCCGTG AACGACTCATACAGGTTCTGTTCAAAGGTGGTGTTTTCCAGTGGAAACGGCTTGAAAACCTTATTGTTCTTGCAAAGGAAAACGTAGCCAAGATGAGCAG CAACCCTGCCTTGCAAGTAAAAGACATCCAAAATTCAAGAAGCTTGCAAATTGAAAAGAAGCTAGACTTGACAAATACCATTAAAGATGGAGCACGTCTC TTCTTTACCGATGAAGGAATTCGGAGGCAGCTGCTTTTGGCTATGACAGAAGACTCGAAACTTCACATTGAAGAGCTTGTTGACGTATATAGACTGGTTG AAGACCAAATCGATATCCCCTCGGTGACTAGGGAAGTTGTGAGAGACATTCCAACTGTTATCCGAGATCTCATACTTTCCTGGAGCGACTCAATCTTATC TGACCGATGA
AA sequence Show only first row Show all	>Potri.006G275600.2 pacid=42767811 polypeptide=Potri.006G275600.2.p locus=Potri.006G275600 ID=Potri.006G275600.2.v4.1 annot-version=v4.1 MDLIYYPNYTITPSLSSQNPKPRSWIILQRSNFRSSPIRAAAASSNVETTKNGSASTTTRRNVTVKTTDRGSSSAMDQLDIERGVCVPFRKYSPETVRSK VLESRGAISSLMLRGVEIVWNLGLYWSNLAYDFLVGRDEEVVPYRARQLRNLLCDLGPSFIKAGQVLASRPDIIREDYMNELCILQDDVPPFPNQVAFNI IEEELGQPLEAVFSKISPQTIAAASLGQVYRATLRATGEDVAIKVQRPRIEPIIFRDLFLFRTLASFLNGISLQKLGCNAELIVDEFGEKLLEELDYTLE ARNIEDFLENFKDDPTVKIPRVYRKLSGSRVLVMEWIDGIRCTNPQAIRDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGN VAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLASDTDVAPIIPALEAIWQNSAGKGLADFNFRTVTGKFNQLVYNYPIRIPERFSLVIRSLLTQE GICLTLEPDFKFLEVAYPYIAKRLLTDPNPALRERLIQVLFKGGVFQWKRLENLIVLAKENVAKMSSNPALQVKDIQNSRSLQIEKKLDLTNTIKDGARL FFTDEGIRRQLLLAMTEDSKLHIEELVDVYRLVEDQIDIPSVTREVVRDIPTVIRDLILSWSDSILSDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31390			Protein kinase superfamily pro...		Potri.006G275600 [exp]	0	1
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Potri.004G092100 [exp]	1.00	0.9697
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	4.89	0.9644
AT2G41705			camphor resistance CrcB family...		Potri.005G174600 [exp]	5.38	0.9494
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Potri.012G109800 [exp]	7.21	0.9515
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	7.48	0.9399
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	7.74	0.9672
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G140750 [exp]	9.48	0.9571
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	9.79	0.9632
AT1G52855			unknown protein		Potri.001G405400 [exp]	10.14	0.9297
AT3G02690			nodulin MtN21 /EamA-like trans...		Potri.012G145300 [exp]	10.95	0.9593

Compare expression of checked genes

Potri.006G275600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.