Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24450 159 / 4e-47 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G12660 150 / 7e-44 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G45470 147 / 5e-41 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 133 / 7e-36 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G31370 124 / 2e-33 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT4G12730 119 / 7e-31 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 115 / 4e-29 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT3G46550 72 / 4e-14 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G005100 [exp] 311 / 2e-106 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.001G037800 [exp] 168 / 7e-50 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.014G071700 [exp] 148 / 2e-41 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.014G168100 [exp] 119 / 8e-31 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 105 / 2e-25 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 103 / 4e-25 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.006G276250 [exp] 72 / 3e-15 ND / Potri.006G174900 [exp] 64 / 2e-11 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G097000 [exp] 62 / 1e-10 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038004 [exp] 149 / 1e-43 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10009235 [exp] 149 / 1e-41 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10020158 [exp] 136 / 2e-38 AT2G24450 127 / 4e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10026957 [exp] 134 / 1e-37 AT2G24450 127 / 2e-35 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Lus10006391 [exp] 117 / 2e-29 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10012344 [exp] 114 / 1e-28 AT4G12730 446 / 9e-156 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 114 / 2e-28 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 107 / 4e-26 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 105 / 2e-25 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10042446 [exp] 99 / 5e-24 AT2G24450 105 / 7e-27 FASCICLIN-like arabinogalactan protein 3 precursor (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G276200.2 pacid=42770278 polypeptide=Potri.006G276200.2.p locus=Potri.006G276200 ID=Potri.006G276200.2.v4.1 annot-version=v4.1 ATGGATTCCAAGGCTTCTTCTCTCCTCTTCATTGCATTCTTGTGCTTAATCTCAACTTCCACAGCCTTCAACAGCACCAAGATCCTTGCACAGTACCCTG AGTTTGCTAACTTTAATGATCTCCTCAGCCAGAGCGGGCTCGCCCAGGAAATGAACAGCCGCCAAACCATCACTGTCCTTGTGCTTGATAACGGATCAAT CGATGGACTCTCTGGCAGACCCTTAGACATTGCAAAGAGGATCTTGAGTGCACATGTAATCCTTGATTACTATGATCAAATAAAGCTTTCGAAACTTCAA AAGGCCAGCACTATCGTTACCACCTTGTACCAAGCTAGTGGTGTTGCAGATAATCGACAAGGTTTCCTGAATATTAGCAGAACTGCTGAGGGAATCAAAT TCGGTTCAGCAATGAAAGGTGCTCCTCTCGTTGCATCACTTGTGAAATCCATCTACTCGCAGCCTTACAACATCTCGGTGCTACAAGTCAGCGAACCTAT TGAGACTCCAGGGATTGAGAACATGGCTCCACCACCACCACCTGGTACTGCTGCCGTTCCCAAGAAGGCACCTGCTCCAGCTCCAAGCACTAAAACGCCA CCAGCTGCACCTCCAACTGCCAAGACTCCAGCCAAATCCCCTGCCAAATCTCCTTCCAAGGCTCCTGCACCATCCAAGGAGGGACCATCTACACCAACTA AAGCACCAGCCGAGGGGCCAGTGGCTGCTGATGGGCCAGTGGCTGCTGGTGGCCCAGTAGCTGATGTGCCCGCAGAGTCCCCAGAGGCTGATACAGAAGT GGCTGAGGAAGCACCAGCTGTAGCACCTGCAAAAGCTGCTTCTTCACGTATGCATGTTGCTGGTGCAACCGTGGTTATCGGATTGTTTGCCTGCATAATG GGTTTTTAA
AA sequence Show only first row Show all	>Potri.006G276200.2 pacid=42770278 polypeptide=Potri.006G276200.2.p locus=Potri.006G276200 ID=Potri.006G276200.2.v4.1 annot-version=v4.1 MDSKASSLLFIAFLCLISTSTAFNSTKILAQYPEFANFNDLLSQSGLAQEMNSRQTITVLVLDNGSIDGLSGRPLDIAKRILSAHVILDYYDQIKLSKLQ KASTIVTTLYQASGVADNRQGFLNISRTAEGIKFGSAMKGAPLVASLVKSIYSQPYNISVLQVSEPIETPGIENMAPPPPPGTAAVPKKAPAPAPSTKTP PAAPPTAKTPAKSPAKSPSKAPAPSKEGPSTPTKAPAEGPVAADGPVAAGGPVADVPAESPEADTEVAEEAPAVAPAKAASSRMHVAGATVVIGLFACIM GF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24450		FLA3	FASCICLIN-like arabinogalactan...		Potri.006G276200 [exp]	0	1
					Potri.013G068601 [exp]	136.82	0.5018

Compare expression of checked genes

Potri.006G276200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.