Plant FIBer expression Database

Potri.006G276250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G276200
[exp]
64 / 6e-13 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G276250.1 pacid=42767395 polypeptide=Potri.006G276250.1.p locus=Potri.006G276250 ID=Potri.006G276250.1.v4.1 annot-version=v4.1
ATGCAGGCAAACAATCCGATAACCACGGTTGCACCAGCAACATGCATACGTGAAGAAGCAGCTTTTGCAGGTGCTACAGCTGGTGCTTCCTCAGCCACTT
CTGTATCAGCCTCTGGGGACTCTGCGGGCACATCAGCTACTGGGCCACCAGCAGCCACTGGCCCATCAGCAGCCACTGGCCCCTCGGCTGGTGCTTTAGT
TGGTGTAGATGGTCCCTCCTTGGATGGTGCAGGAGCCTTGGAAGGAGATTTGGCAGGGGATTTGGCTGGAGTCTTGGCAGTTGGAGGTGCAGCTGGTGGC
GTTTTAGTGCTTGGAGCTGGAGCAGGTGCCTTCTTGGGAACGGCAGCAGTACCAGGTGGTGGTGGTGGAGCCATGTTCTCAATCCCTGGAGTCTCAATAG
GTTCGCTGACTTGTAGCACCGAGATGTTGTAA
AA sequence
>Potri.006G276250.1 pacid=42767395 polypeptide=Potri.006G276250.1.p locus=Potri.006G276250 ID=Potri.006G276250.1.v4.1 annot-version=v4.1
MQANNPITTVAPATCIREEAAFAGATAGASSATSVSASGDSAGTSATGPPAATGPSAATGPSAGALVGVDGPSLDGAGALEGDLAGDLAGVLAVGGAAGG
VLVLGAGAGAFLGTAAVPGGGGGAMFSIPGVSIGSLTCSTEML

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G276250
[exp]
0 1
AT3G15280 unknown protein Potri.001G398300
[exp]
3.31 0.7889
AT3G62240 C2H2ZnF RING/U-box superfamily protein... Potri.013G004200
[exp]
4.58 0.7401
AT5G03415 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) Potri.016G093200
[exp]
9.94 0.6936
AT4G37270 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY MET... Potri.005G142732
[exp]
10.95 0.7098
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G242500
[exp]
12.00 0.7348
AT5G46840 RNA-binding (RRM/RBD/RNP motif... Potri.003G093900
[exp]
16.43 0.6367
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
17.00 0.6677 Pt-HUA1.1
AT1G72050 C2H2ZnF TFIIIA transcription factor IIIA (.1.... Potri.019G081100
[exp]
20.49 0.6393
AT4G00231 MEE50 maternal effect embryo arrest ... Potri.014G074900
[exp]
20.78 0.6666
AT5G47900 Protein of unknown function (D... Potri.014G123800
[exp]
20.97 0.6561

Potri.006G276250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.