Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19940 279 / 2e-95 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT3G26070 50 / 3e-07 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020700 [exp] 62 / 5e-11 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G209600 [exp] 54 / 1e-08 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026221 [exp] 305 / 9e-106 AT5G19940 276 / 4e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10042448 [exp] 287 / 4e-98 AT5G19940 250 / 9e-84 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020982 [exp] 55 / 7e-09 AT3G26070 265 / 1e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [poplar] [flax] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Potri.006G276400.2 pacid=42770352 polypeptide=Potri.006G276400.2.p locus=Potri.006G276400 ID=Potri.006G276400.2.v4.1 annot-version=v4.1 ATGGCTTCTTCTTCTTTGGCTCTGTTATCTTCCTTCAGAGGCCCTGAGTTATGCAAAACAAAGTCCCTAATCTCTCACTCAAAACATCCCAGTGACGTTT CATTTTCATTTCAGTGTAGAAAGAGCAGAATCCCACCAATTTTGTGTTCTGTTTCGGTCTCTGACCCTCAAGTCCTCACTGGACGACCTGATGATTTGGT TGCTTCTATTCTCTCTAAGGTTACAGAAACGGACAGGGGGGTTTCGCTAACTAAAGAACAACAAGAAGAAGTAACTCGAGTTGCGCAAGAGTTGCAGAAA TATTGTGTTGCTGAACCAGTGAGATGTCCTCTTATATTTGGAGAGTGGGATGTGGTGTATTGTTCGAACCCAACTTCCCCTGGAGGTGGCTACAGGAGTG CGTTTGGCCGTCTTGTTTTTAGAACAAAGGAAATGATTCAGGCTGTTGAAGCTCCTGATACTGTCAAAAACAAGGTGTCATTTTCTGCTCTGGGATTCCT TGATGGAGAGGTTTCCTTGAAAGGTAGGCTGAAAGCCTTAGATGATAGTTGGATTCAAGTTATATTTGAGGCACCTCAACTGAAGGTTGGATCACTGGAG TTCCAGTACGGTGGAGAAAGCGAGGTTAAGTTGAAGATCACTTATATTGATGAGAAGATCAGGTTGGGAAAGGGCTCAAGAGGTTCTCTGTTTGTTTTTC AAAGACGCAAATAG
AA sequence Show only first row Show all	>Potri.006G276400.2 pacid=42770352 polypeptide=Potri.006G276400.2.p locus=Potri.006G276400 ID=Potri.006G276400.2.v4.1 annot-version=v4.1 MASSSLALLSSFRGPELCKTKSLISHSKHPSDVSFSFQCRKSRIPPILCSVSVSDPQVLTGRPDDLVASILSKVTETDRGVSLTKEQQEEVTRVAQELQK YCVAEPVRCPLIFGEWDVVYCSNPTSPGGGYRSAFGRLVFRTKEMIQAVEAPDTVKNKVSFSALGFLDGEVSLKGRLKALDDSWIQVIFEAPQLKVGSLE FQYGGESEVKLKITYIDEKIRLGKGSRGSLFVFQRRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19940			Plastid-lipid associated prote...		Potri.006G276400 [exp]	0	1
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	1.73	0.9834
AT2G32500			Stress responsive alpha-beta b...		Potri.014G154900 [exp]	2.00	0.9804
AT1G35340			ATP-dependent protease La (LON...		Potri.013G105500 [exp]	2.44	0.9811
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	3.00	0.9752
AT1G52220			unknown protein		Potri.001G184700 [exp]	3.16	0.9744
AT4G17740			Peptidase S41 family protein (...		Potri.008G173900 [exp]	3.46	0.9767
AT5G01920		STN8	State transition 8, Protein ki...		Potri.016G138500 [exp]	3.74	0.9763
AT5G25630			Tetratricopeptide repeat (TPR)...		Potri.018G037200 [exp]	5.09	0.9668
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Potri.002G055700 [exp]	6.70	0.9797	Pt-OEE2.2
AT1G03630		PORC ,POR C	protochlorophyllide oxidoreduc...		Potri.013G135500 [exp]	8.00	0.9756	Pt-POR.2

Compare expression of checked genes

Potri.006G276400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.