Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20780 74 / 1e-16 CML42 calmodulin like 42 (.1) AT5G44460 74 / 1e-16 CML43 calmodulin like 43 (.1) AT1G05990 62 / 1e-12 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G12860 61 / 5e-12 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT4G14640 61 / 5e-12 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT4G03290 60 / 1e-11 EF hand calcium-binding protein family (.1) AT3G22930 59 / 4e-11 CML11 calmodulin-like 11 (.1) AT3G29000 59 / 4e-11 Calcium-binding EF-hand family protein (.1) AT3G47480 58 / 9e-11 Calcium-binding EF-hand family protein (.1) AT3G07490 57 / 9e-11 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G029700 [exp] 75 / 1e-16 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.016G142000 [exp] 69 / 2e-14 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.006G112500 [exp] 68 / 3e-14 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.002G239100 [exp] 64 / 3e-13 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 65 / 4e-13 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.017G084800 [exp] 61 / 1e-11 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.010G080900 [exp] 60 / 1e-11 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1) Potri.008G159300 [exp] 59 / 2e-11 AT3G22930 235 / 1e-80 calmodulin-like 11 (.1) Potri.012G041000 [exp] 58 / 5e-11 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026974 [exp] 134 / 5e-40 AT3G29000 68 / 3e-14 Calcium-binding EF-hand family protein (.1) Lus10020171 [exp] 129 / 4e-38 AT3G59440 67 / 3e-14 Calcium-binding EF-hand family protein (.1) Lus10017174 [exp] 74 / 3e-16 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10003239 [exp] 72 / 7e-16 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10021134 [exp] 72 / 1e-15 AT4G20780 236 / 8e-80 calmodulin like 42 (.1) Lus10035611 [exp] 70 / 8e-15 AT4G20780 242 / 3e-82 calmodulin like 42 (.1) Lus10020389 [exp] 63 / 2e-13 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10034463 [exp] 64 / 8e-13 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10041179 [exp] 62 / 9e-13 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10019090 [exp] 63 / 3e-12 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.006G276500.1 pacid=42767679 polypeptide=Potri.006G276500.1.p locus=Potri.006G276500 ID=Potri.006G276500.1.v4.1 annot-version=v4.1 ATGATTGGCATAACTGGAGTATGCAGCAGATTAGTGCAAGCACTAGGAGTTTCAGGACCAAGCTCATCAACTTGTCTTCAAACAACTCCAACTTGCAAGC AAGAAAAAGCGCGTCAAGCCGATGAGTTGATGATCCGGGCATTGACTGCTGTGTTTGGAATGGAAAACAATGGGAAAATAAAGAAGGAGAAAGCGCGACG GGTGGTGGAAAAGCTTGGTTTGATATATGTTGAAGCAGGAGGAGAAGAAGACCAGGCTATTTTTGACCTACCAGGTGGTGTAGACGATGAAGAAGTGCCT GTAGAGGAGGTGCTGAATGGATTGGAAGATGGCTCAGATCGCCATCAATTGTTGCAAGAAGCCTTCAAGATTTTCGATGAGAATGGTAATGGATATATCG AAGCAGTGGAGTTGAAGAGAGTGCTGCAATGCTTGGGACTGGACAAAGGCTGGGACATGGAGCAGATCCAGAAGATGTTGAAGGCTGCGGACTTGAATTT CGACGGAATGGTTGATTTTAATGAGTTTGAATTGATGATGGGATAA
AA sequence Show only first row Show all	>Potri.006G276500.1 pacid=42767679 polypeptide=Potri.006G276500.1.p locus=Potri.006G276500 ID=Potri.006G276500.1.v4.1 annot-version=v4.1 MIGITGVCSRLVQALGVSGPSSSTCLQTTPTCKQEKARQADELMIRALTAVFGMENNGKIKKEKARRVVEKLGLIYVEAGGEEDQAIFDLPGGVDDEEVP VEEVLNGLEDGSDRHQLLQEAFKIFDENGNGYIEAVELKRVLQCLGLDKGWDMEQIQKMLKAADLNFDGMVDFNEFELMMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	2.44	0.9579
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Potri.018G139400 [exp]	2.64	0.9587	PIN9,Pt-PIN2.4
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	2.82	0.9459	RIP1.3
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Potri.004G136900 [exp]	4.24	0.9435
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G315300 [exp]	4.47	0.9516
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	5.19	0.9552
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	7.74	0.9495
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	8.77	0.9470
AT3G24020			Disease resistance-responsive ...		Potri.001G054000 [exp]	10.39	0.9480
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.011G026200 [exp]	10.48	0.9395

Compare expression of checked genes

Potri.006G276500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.