Plant FIBer expression Database

Potri.006G276900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2)
AT4G31340 471 / 5e-165 myosin heavy chain-related (.1.2)
AT4G30090 171 / 7e-49 EMB1353 embryo defective 1353 (.1)
AT1G28410 55 / 3e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G003700
[exp]
714 / 0 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2)
Potri.006G076700
[exp]
183 / 1e-53 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2)
Potri.004G048500
[exp]
46 / 2e-05 AT1G28410 186 / 9e-58 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020166
[exp]
517 / 0 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2)
Lus10026967
[exp]
510 / 7e-180 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2)
Lus10041099
[exp]
440 / 8e-153 AT4G31340 397 / 3e-136 myosin heavy chain-related (.1.2)
Lus10036424
[exp]
432 / 1e-149 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2)
Lus10015403
[exp]
50 / 2e-06 AT1G28410 189 / 9e-59 unknown protein
Lus10013982
[exp]
49 / 3e-06 AT1G28410 201 / 1e-63 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G276900.2 pacid=42769260 polypeptide=Potri.006G276900.2.p locus=Potri.006G276900 ID=Potri.006G276900.2.v4.1 annot-version=v4.1
ATGGCGGCCTCAAAACTCGCTTCTCTATCGATTCTCTTCATTTTTGCCCTAACTCTCACTGCCGTAGTCAGTGTTAGGGCTGATTATGATGATATTACCG
GGTCCGTGGCTGCCGTTGATTCCTCGGCGTTCAAGATCGAGCTTGATCAACTCAAGTCTAAGATCCACGCTCTCGAATCTCATATTGATGAGAAAACGAA
AGAATTGAAGGGTAAGGATGATATGATAGCGCTGAAGGAGAAGATCATTCAAGAGAAAGTAGATAGCATCGGGTCATTGCAAAGTGAACTATCATCTCTC
CAGAATAATGGGAAGACAGATGCTCAAGAGCAAGTTAGAAAGGCGCATGCACGTGCAGGCGAACTAGAAAAACAGGTTGATAAACTTGCCAAGGAATTAG
AGACTCAACAAAAGAAAAAGGAGGCTCTGGAAGCCAGAGCAAGTGAAGCTGAGAAGAAGATTAGTGAATTGAACTTGAAACTAGCAGATCTTGCAAAGAT
TAATGAGGAACAGAAAAGCAAAATCCGTAAAACAGAACGTGCTCTCAAAATTGCTGAGGAAGAACTGTTAAAAACAAAATCCGAGGCCACTTCAAAGGCC
AAAGAGCTGATGGAGGTTCACGGTGCATGGCTTCCACCTTGGCTTGCTGTACAATTAGTTCATTGGCAGTCTCTAGCGCAGACACATTGGAATGAGCATG
GAAAGCCTGTCATGGAACTGGCCATTCAAAGGGCCCTGGAGAAAAAAGCCCAAGCTGAAAAGTGGGCTAAGCCCCATGTGGAAACAATTAAAACTAAATG
GGTCCCAGCTATAAAAGAGCAATGGGTTGTGATAGCGACACAAGTTGAACCTCATGTGCAATCATTAACCGTTAAAACTGTCGAAATCTATGAGGCCTCA
AAGACTACAATCACTGCGCACATCATCAGGGTACAAGAAATAGTTGATCCTTGCTTTCAGGAAGCTAAAAAGTTCAGTGAGCCATATATTGATCAGGTTG
CTACAGTGACAAAGCCCCATGTTGATAAAGTTAGGGTGGTTTTGAAGCCCTATACGAAAGAGGCAGTTGATGCATACGGGAAATTTTTAGAGTCTGCAAC
TACATACCACAATCAGGTGCAAAGCACCGTACAAGAGACACTGGAAAAGCATGAGCTCACAAAACCACTCGCAACAAAAGACTCCATCTGGTTCATTGCC
TCTGCTTTGTTTACCCTACCTATCTTCATTTTGGCCAGAGTTTGTTCTTCCATCTTCTGCAAAAAGTCAAAGAAACCAGTTAGAAATGCTCAAACCAGTC
ACTCTCGTCGCAAGGCTAAACGGGGGCATCCTGACAAGTAG
AA sequence
>Potri.006G276900.2 pacid=42769260 polypeptide=Potri.006G276900.2.p locus=Potri.006G276900 ID=Potri.006G276900.2.v4.1 annot-version=v4.1
MAASKLASLSILFIFALTLTAVVSVRADYDDITGSVAAVDSSAFKIELDQLKSKIHALESHIDEKTKELKGKDDMIALKEKIIQEKVDSIGSLQSELSSL
QNNGKTDAQEQVRKAHARAGELEKQVDKLAKELETQQKKKEALEARASEAEKKISELNLKLADLAKINEEQKSKIRKTERALKIAEEELLKTKSEATSKA
KELMEVHGAWLPPWLAVQLVHWQSLAQTHWNEHGKPVMELAIQRALEKKAQAEKWAKPHVETIKTKWVPAIKEQWVVIATQVEPHVQSLTVKTVEIYEAS
KTTITAHIIRVQEIVDPCFQEAKKFSEPYIDQVATVTKPHVDKVRVVLKPYTKEAVDAYGKFLESATTYHNQVQSTVQETLEKHELTKPLATKDSIWFIA
SALFTLPIFILARVCSSIFCKKSKKPVRNAQTSHSRRKAKRGHPDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24420 DNA repair ATPase-related (.1.... Potri.006G276900
[exp]
0 1
AT5G19990 ATSUG1, RPT6A regulatory particle triple-A A... Potri.010G098300
[exp]
7.93 0.6236 A1.4
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400
[exp]
8.71 0.6225
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.011G040900
[exp]
13.07 0.5990
AT5G56450 PM-ANT Mitochondrial substrate carrie... Potri.018G062350
[exp]
13.85 0.6520
AT4G31550 WRKY ATWRKY11, WRKY1... WRKY DNA-binding protein 11 (.... Potri.006G072400
[exp]
20.19 0.5960
AT5G12440 C3HZnF CCCH-type zinc fingerfamily pr... Potri.001G276300
[exp]
33.33 0.5969
AT2G28120 Major facilitator superfamily ... Potri.004G215600
[exp]
39.16 0.5933
AT5G62670 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPas... Potri.012G071600
[exp]
39.76 0.5312 HA2.1
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Potri.018G112800
[exp]
41.13 0.6064
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Potri.002G263200
[exp]
42.61 0.6004

Potri.006G276900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.