Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 340 / 9e-117 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT3G18400 257 / 4e-84 NAC ANAC058 NAC domain containing protein 58 (.1) AT5G53950 258 / 2e-83 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G61430 255 / 8e-83 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 249 / 1e-80 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 243 / 6e-79 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G15170 241 / 1e-77 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G18270 238 / 2e-76 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT1G76420 238 / 2e-76 NAC NAC368, CUC3, ANAC031 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G04060 233 / 4e-74 NAC ANAC046 NAC domain containing protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003800 [exp] 635 / 0 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.012G056300 [exp] 273 / 3e-90 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1) Potri.015G046800 [exp] 271 / 2e-89 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.011G115400 [exp] 262 / 3e-85 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G396300 [exp] 253 / 2e-82 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.017G086200 [exp] 253 / 1e-81 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.012G001400 [exp] 249 / 2e-80 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 249 / 1e-79 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.015G020000 [exp] 246 / 3e-79 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020165 [exp] 298 / 6e-99 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10026966 [exp] 288 / 4e-95 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009029 [exp] 273 / 8e-90 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10009669 [exp] 272 / 3e-89 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10005537 [exp] 257 / 6e-84 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10038937 [exp] 255 / 3e-83 AT3G18400 268 / 5e-89 NAC domain containing protein 58 (.1) Lus10027227 [exp] 253 / 2e-82 AT3G18400 275 / 1e-91 NAC domain containing protein 58 (.1) Lus10001648 [exp] 251 / 2e-81 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10021659 [exp] 251 / 3e-81 AT5G61430 361 / 8e-125 NAC domain containing protein 100 (.1) Lus10026879 [exp] 238 / 5e-76 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.006G277000.1 pacid=42768094 polypeptide=Potri.006G277000.1.p locus=Potri.006G277000 ID=Potri.006G277000.1.v4.1 annot-version=v4.1 ATGCAAAAGCCTACAAGTGATAAAGGGAAGAAACAAGTTGAAAAGGAGAAGGATATGGAAGGAGATGCAAAGGATGAGACTTTGCCTCCGGGTTTTCGGT TTCACCCCACAGATGAAGAACTCATAACTTACTATCTACAAAGCAAGATTTCTGACGCTGATTTCTCATGTAGAGCTATTGGTGATGTTGATCTCAACAA GTGCGAACCATGGGATCTTCCAGGGAAAGCAAAGATGGGAGAAAAGGAGTGGTATTTCTTTAGTCTTCGAGACCGAAAATATCCAACTGGTGTGAGGACA AACCGGGCAACAAATACTGGATACTGGAAGACCACTGGAAAAGATAAAGAGATCTTCAACAGTGTCACATCACAGTTGGTAGGGATGAAGAAGACATTGG TTTTCTATAGAGGAAGAGCTCCAAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGTTTCCACTCCAAAGCTGCCTTTAGAGCTTCCAAGGATGA ATGGGTGGTTTGCCGAGTCTTCCAAAAGAGCGCGGGGGTCAAGAAATATCCTTCAAACCAATCGAGGGCAGCAAATCCCTACAACCTCGAGATAGGACCA AGTGTTATACCTTCACAAATGATGCAGGCTGCAGAGAACTTCCAGCTCCCCATTGGAAGAAACTACATGATGAGTAACGCAGAACTTCAGGCAGAGCTTA CTAGGGTTTTCAGAGCTGGTGGATCAACTGGTATCAATCTACCAATGCAGTCCCCGTTGAATAATACTTACTCCGTTGGAGGAGGAGGTCCGGGAGGAGG AGGATGCTTTACTATATCAGGGTTGAACTTGAACCTTGGAGGGGCTGCATCACAACCGATGTTGCGTCCAATGGCACCTCCGGTTATGAATCAACAAGAT GTAATAAACTCTTCCATGATGACTAGTAGTAATTCTTTTGCTTTAGATCAGGCTGCAGCTTATGGTGCAGAAATGAACACTGCAAATGGGCATGCCAACA GATTCATGGGCATGGAACAGTGCATGGATTTGGAGAACTACTGGCCTCCATACTGA
AA sequence Show only first row Show all	>Potri.006G277000.1 pacid=42768094 polypeptide=Potri.006G277000.1.p locus=Potri.006G277000 ID=Potri.006G277000.1.v4.1 annot-version=v4.1 MQKPTSDKGKKQVEKEKDMEGDAKDETLPPGFRFHPTDEELITYYLQSKISDADFSCRAIGDVDLNKCEPWDLPGKAKMGEKEWYFFSLRDRKYPTGVRT NRATNTGYWKTTGKDKEIFNSVTSQLVGMKKTLVFYRGRAPRGEKTNWVMHEYRFHSKAAFRASKDEWVVCRVFQKSAGVKKYPSNQSRAANPYNLEIGP SVIPSQMMQAAENFQLPIGRNYMMSNAELQAELTRVFRAGGSTGINLPMQSPLNNTYSVGGGGPGGGGCFTISGLNLNLGGAASQPMLRPMAPPVMNQQD VINSSMMTSSNSFALDQAAAYGAEMNTANGHANRFMGMEQCMDLENYWPPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.006G277000 [exp]	0	1
AT3G45070			P-loop containing nucleoside t...		Potri.010G138501 [exp]	1.00	0.9731
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.013G044500 [exp]	2.44	0.9721
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048500 [exp]	2.44	0.9719
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G007000 [exp]	2.82	0.9597	IFS1.39
AT5G51790	bHLH	bHLH120	basic helix-loop-helix (bHLH) ...		Potri.012G132000 [exp]	2.82	0.9715
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	4.24	0.9612
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	6.48	0.9256	Pt-COL6.1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.016G099200 [exp]	7.48	0.9605
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044600 [exp]	8.06	0.9135
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154700 [exp]	8.12	0.9292

Compare expression of checked genes

Potri.006G277000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.