Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24840 427 / 2e-153 tRNA (guanine-N-7) methyltransferase (.1) AT5G17660 50 / 3e-07 tRNA (guanine-N-7) methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003900 [exp] 499 / 0 AT5G24840 426 / 7e-153 tRNA (guanine-N-7) methyltransferase (.1) Potri.013G070800 [exp] 59 / 6e-10 AT5G17660 344 / 5e-119 tRNA (guanine-N-7) methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020164 [exp] 443 / 8e-160 AT5G24840 412 / 1e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10026965 [exp] 441 / 6e-159 AT5G24840 412 / 2e-147 tRNA (guanine-N-7) methyltransferase (.1) Lus10015923 [exp] 67 / 1e-12 AT5G17660 366 / 5e-128 tRNA (guanine-N-7) methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02390 [poplar] [flax] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G277100.1 pacid=42767262 polypeptide=Potri.006G277100.1.p locus=Potri.006G277100 ID=Potri.006G277100.1.v4.1 annot-version=v4.1 ATGTTAGAAAATGAGGCAAACCCGACTATCAGTAAGTCAACTGGGTTGCCTAGGAAGCGTTTTTATCGAGCAAGAGCACATAGCAATCCATTGAGTGATT CGCATTTCCCTGTTCCGATTTCTCCTAGTCATGTTGACTACTCGCTTCATTACCCTCAGTTCTTTTCCTCGTCCGGTGAAGTTGGCAGTATCAAAAAGGT CCAGTTTGCTGATGTTGGTTGTGGGTTTGGAGGGCTGCTGATTAGTCTCTCAACACTTTTTCCAGAGACCTTAATGATTGGGATGGAGCTTAGGGATAAG GTGACAGAGTATGTGAAGGAACGGATTTTGGCGTTGAGGACAACAAATCCAGGTCAATATCAAAATGTCTCTGTGGTTCGGACCAATTCGATGAAATACA TTCCTAATTATTTTGAGAAGGGGCAACTTACAAAGATGTTTTTCCTGTTTCCTGATCCTCATTTCAAAGAGAAGAATCATCGTCGCCGAGTGATCAGTCC ACATTTACTTGATGAGTATGCATATGTTCTCGAGGTTGGTGGCATTATCTATTCAATTACAGATGTGGAGGAGCTTGGGGATTGGATGAAGACTTGTTTG GAGAATCACCCCATGTTTGAAGCCCTCACAGAGGAGGAACTCGAAGCAGATCCTGCTGTGAAACTCCTGAGGACAGCAACTGAAGAAGGGCAGAAGGTTG CTAGGAATGGGGGGCAGACTTTTCAAGCAGTCTACAGACGTATCGCACCGTCCCTTTGA
AA sequence Show only first row Show all	>Potri.006G277100.1 pacid=42767262 polypeptide=Potri.006G277100.1.p locus=Potri.006G277100 ID=Potri.006G277100.1.v4.1 annot-version=v4.1 MLENEANPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQFFSSSGEVGSIKKVQFADVGCGFGGLLISLSTLFPETLMIGMELRDK VTEYVKERILALRTTNPGQYQNVSVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLEVGGIIYSITDVEELGDWMKTCL ENHPMFEALTEEELEADPAVKLLRTATEEGQKVARNGGQTFQAVYRRIAPSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24840			tRNA (guanine-N-7) methyltrans...		Potri.006G277100 [exp]	0	1
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.001G153000 [exp]	5.56	0.8494
AT5G40080			Mitochondrial ribosomal protei...		Potri.006G070700 [exp]	8.48	0.8443
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.007G065700 [exp]	11.61	0.8145	LOS1.1
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Potri.001G185600 [exp]	12.44	0.7896
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	18.33	0.7717
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	18.97	0.8069
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.013G027600 [exp]	21.54	0.8318	ATBBC1.1
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076500 [exp]	22.97	0.8329
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	23.23	0.7178
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.017G001800 [exp]	23.95	0.7777	Pt-COS1.2

Compare expression of checked genes

Potri.006G277100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.