Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19260 168 / 9e-46 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G24330 55 / 4e-08 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT1G77250 55 / 6e-08 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G09790 52 / 6e-07 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G01460 48 / 1e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT4G32010 45 / 7e-05 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT1G50620 44 / 0.0002 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G44800 44 / 0.0003 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G142300 [exp] 224 / 1e-65 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G075400 [exp] 221 / 2e-63 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.012G018300 [exp] 56 / 3e-08 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 54 / 7e-08 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.014G122400 [exp] 49 / 9e-06 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.017G072460 [exp] 47 / 3e-05 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.003G110100 [exp] 46 / 6e-05 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.007G109900 [exp] 45 / 0.0001 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.006G083600 [exp] 45 / 0.0001 AT2G37520 932 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020162 [exp] 288 / 8e-93 AT2G19260 156 / 1e-41 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10015537 [exp] 92 / 4e-20 AT2G19260 86 / 9e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020012 [exp] 92 / 2e-19 AT5G57180 211 / 2e-60 chloroplast import apparatus 2 (.1.2.3) Lus10030625 [exp] 49 / 1e-05 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 44 / 0.0002 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10015266 [exp] 44 / 0.0002 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10008796 [exp] 44 / 0.0002 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10042764 [exp] 44 / 0.0002 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10036223 [exp] 44 / 0.0003 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10038363 [exp] 44 / 0.0004 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF01448 [poplar] [flax] ELM2 ELM2 domain
Representative CDS sequence Show only first row Show all	>Potri.006G277400.11 pacid=42768066 polypeptide=Potri.006G277400.11.p locus=Potri.006G277400 ID=Potri.006G277400.11.v4.1 annot-version=v4.1 ATGTCTGGTCATTTTGAGGTCGATGGTTTTGATCAAATCCGAGAGGATTTGAATCCATCCACCGCAATCTTATACCCTGAGCCATATCAGCACGGGATGC TAAATCTTTCACCTCGGTGGGTCCCACCGGAAATCCGTCGTGATGAGGCGGCGTGGCAGGTGAACATCATGTTGCATAGTTTGATCCCAAGTTCAGTTGA GGCTGCTCTACCATTTGCTCCCAATTACAGCAGACAAGATCTATTCTCTGAGTGGGTGCCAGAAAAAGCCTGGAAGGATGGTTCAAATCCATTGATTGCC GGCAATTGTTATGAAATTCCGGGATCATATGTGGCAAGGAAGCGAAGGAAAAAGTCTGCTATAATGTCCTCGGTTGAGCCAGAAACTGATAAAGCACCAA CCAATGCAGTGAACTGTGATCCTCCAGTGGTAAATGATGATGGTGTTAGAGCTCGTACTATCCCATCTGTTGTTGCTAAATCAAAGTCAGGAATGGGAGT TGGTTCCATAACCGCAAGGATTAACATTAGCAACATTGTAGAGCTCCCCGATTCTGAGCTAGAGGTGTCAGGTGATGATCTCTCAATAAGAGAACTCTGC ACTTCAGTTCTCAGAAGTCACGGGCTGCTCGCTGGAGATTGTCCTGTGAGCAACAGTGCTCCCATTGAAGTTCTGGGAAATATTAAGAACAACAATTTTT TTCAGTCATGTGAGCTATGTGGGAATCTTGAGAAAGCACTTAATATGTTACTTTGTGATCATTGTGAAGAGGCATTTCATCTATCTTGCTGCAATCTAAA CATGGAGATGTTACCCACTGACTTGTGGTTTTGTCCATCCTGTTCAAAACTGAATCACAACGTTTCACAAGAGACTTCTTTTCTCAAAACATGTAGCATC AGTTGGTGGAATGAAAAATCTAAGCTGGGTCCTATAGCTTCCATGTTGAAATACCCTGAGGCACACACATCTCGTGTGAGGATCGGTACATCTTATCAAG CAACAGTTCCTGAGTGGTCCGATCAGCTTTCCATGGATTCTGATTGCTTCGGTGAGCCTATTGAAATAGATACATCGCAGACTGTTTGCTTACACGAATG CCCTCAAGACAGGTCTTCAAATGCCAAGCCTATGAGTAATTGGCTCCAATGCCGAGAAGTTCTACACGATGATGCAAGAGGTATTGAGGGAACCATATGT GGGAAGTGGCGCAGGGCGCCATTTTCTGAAGTCCAAACTGACTCCTGGGATTGTTCTTGCTCTGTTCTTTGGGACCCATCCCATTCAGACTGCACTGCTC CTCAGGAGCTGGAAACCGATGAAGTTTTACGACAACTGAAGTATGTAGAACAGCTGAGACTTCGACTTGTTGCTAAAAAGAGAAGAATTCCATGA
AA sequence Show only first row Show all	>Potri.006G277400.11 pacid=42768066 polypeptide=Potri.006G277400.11.p locus=Potri.006G277400 ID=Potri.006G277400.11.v4.1 annot-version=v4.1 MSGHFEVDGFDQIREDLNPSTAILYPEPYQHGMLNLSPRWVPPEIRRDEAAWQVNIMLHSLIPSSVEAALPFAPNYSRQDLFSEWVPEKAWKDGSNPLIA GNCYEIPGSYVARKRRKKSAIMSSVEPETDKAPTNAVNCDPPVVNDDGVRARTIPSVVAKSKSGMGVGSITARINISNIVELPDSELEVSGDDLSIRELC TSVLRSHGLLAGDCPVSNSAPIEVLGNIKNNNFFQSCELCGNLEKALNMLLCDHCEEAFHLSCCNLNMEMLPTDLWFCPSCSKLNHNVSQETSFLKTCSI SWWNEKSKLGPIASMLKYPEAHTSRVRIGTSYQATVPEWSDQLSMDSDCFGEPIEIDTSQTVCLHECPQDRSSNAKPMSNWLQCREVLHDDARGIEGTIC GKWRRAPFSEVQTDSWDCSCSVLWDPSHSDCTAPQELETDEVLRQLKYVEQLRLRLVAKKRRIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G277400 [exp]	0	1
AT5G47220	AP2_ERF	ATERF-2, ERF2, ...	ETHYLENE RESPONSE FACTOR- 2, e...		Potri.004G051700 [exp]	4.89	0.8548
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	5.29	0.8520	Pt-PK1.1
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	8.48	0.8420	Pt-FZF.1
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	8.54	0.8711
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036160 [exp]	9.48	0.8459
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	11.66	0.8342
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G114000 [exp]	12.00	0.8343
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113350 [exp]	12.48	0.8417
AT4G27020			unknown protein		Potri.001G424500 [exp]	14.49	0.8552
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036400 [exp]	15.71	0.8326

Compare expression of checked genes

Potri.006G277400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.