Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24850 782 / 0 CRY3 cryptochrome 3 (.1) AT2G47590 204 / 4e-59 PHR2 photolyase/blue-light receptor 2 (.1) AT3G15620 168 / 4e-45 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT1G04400 123 / 2e-29 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT4G08920 99 / 1e-21 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT4G25290 67 / 3e-11 DNA photolyases;DNA photolyases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128500 [exp] 199 / 3e-57 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.002G204000 [exp] 199 / 3e-57 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.003G060000 [exp] 164 / 8e-44 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.010G071200 [exp] 133 / 1e-32 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.002G096900 [exp] 116 / 4e-27 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 115 / 9e-27 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.008G166632 [exp] 67 / 1e-12 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.015G129500 [exp] 65 / 8e-11 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020878 [exp] 761 / 0 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 464 / 1e-161 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10007880 [exp] 200 / 2e-57 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1) Lus10021188 [exp] 129 / 1e-31 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 127 / 1e-30 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10011822 [exp] 127 / 2e-30 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10033446 [exp] 97 / 9e-21 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 91 / 7e-19 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10031716 [exp] 77 / 3e-14 AT4G25290 700 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10031137 [exp] 76 / 6e-14 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0039 [poplar] [flax] PF03441 [poplar] [flax] FAD_binding_7 FAD binding domain of DNA photolyase
Representative CDS sequence Show only first row Show all	>Potri.006G277500.3 pacid=42767864 polypeptide=Potri.006G277500.3.p locus=Potri.006G277500 ID=Potri.006G277500.3.v4.1 annot-version=v4.1 ATGGCCATTTTTTGTCACACTCTCTCCTCCCTTTCCCTCAAAAAACTCATAAATCCTTCAAAACCCACTTCAACATTCACATATATCAATCTCCATATCC GATTTCAAGCCATGAATTCGATCTCGGACTCTTCTTCTTCATCTTCTTCTAAAGTGATGTGTCAGCTGGTTCCAGGACTTGACACCAATGAAAAGGAGTA CATTTTGGATCAAACCTTTGAACGATACACATCAAAGATGGTAAAGAGGAATGGAAAAGGAGCTGCCATTGTTTGGTTCAGGAATGATTTGAGAGTTTTG GACAATGAGGTGCTGTTCAAGGCTTGGGTTAATTCTGAAAGTGTTTTGCCTGTTTATTGTGTGGATCCTAGACTTTTTCAAGCTAGTACTTGCTATTTTG GCTTCCCTAAAACTGGAGGCTTAAGAGGGCAGTTTATTGTAGAGTGTTTGGTTGATTTGAAGAAGAATTTGATGAAAAGGGGTCTAAACTTGCTTATTAG ACATGGTAAACCTGAGGAAATCATCCCTGCTCTTGCTAAAGATTTTGCATCCCACACAGTATATGCACAAAAAGAGACATGTAGTGAAGAAGTAAATGTT GAGAAACTTGTCAGCAAAGCGCTCCGGCGAGTTCATCTGCCACATTCTACTGGGAGATCTACCAGCCAGGGTTCTGCAAACAGTCCGACACTGCAACTAG TTTGGGGTGGCACTATGTACCACTTAGATGACCTCCCATTCTCTACCAACAGCATACCTGATGTGTATACTCAGTTTCGTAAGTCTGTTGAAGCAAGATG TTCCATCAGAAGCTGTGCAAAAATTTCAATGTCCCTTGGGCCAGCTCCTCGCGTCGAGGATTGGGGATGTGTTCCATCAATTGAGCAACTTGGACTCCAA CCACAAGAGGTTAGCAAAGGAATGAGGTTTTTGGGAGGTGAAACAGCTGCACTAAGCAGGGTGTATGAGTACTTCTGGAAGAAGGATTTCCTAAAGATAT ACAAAGAGACAAGAAATGGGATGCTGGGACCTGATTACTCAACAAAATTCTCTCCATGGCTAGCTTCAGGAAGCCTCTCTCCACGGTTTATATATGAAGA GGTGAAGAGATATGAAAAGGGAAGGCTAGCAAATGATTCCACATACTGGGTTTTGTTTGAGTTGATTTGGAGGGATTACTTCAGGTTTATCTCATTCAAA TACGGAAATTCCATCTTCCATATAGGCGGGCCACGAAATGTTGAGCGTAGATGGAGTCAAGACCAGAGATTGTTTGATTCTTGGAGAAATGGCTGTACAG GGTACCCTCTCATAGATGCCAATATGAAGGAATTATCAGCTACTGGATTCATGTCCAATCGAGGAAGACAAATTGTATGTTCCTTTCTTGTTCGAGACAT GGGCATCGATTGGCGCATGGGAGCTGAATGGTTTGAGACATTCCTCTTGGACTATGACCCTTGTTCGAACTATGGGAACTGGACCTATGGTGCAGGAGTC GGGAATGACCCTAGAGAAGATCGTTATTTCAGCATCCCCAAGCAAGCACAAACGTATGATCCTGAGGGTGAATATGTAGCATACTGGTTGCCGCAGCTGC AAGAACTTCCCAAAGAGAAGAGGAACTTTCCTGGGAAACTATACATGGAGCAAATTGTGCCTCTCAAATTTGGAAACCCAAATGGACACCGAGGTCAAGA CAGGGCCTCCGCGGCAAGAAAAACCAATTATGGAGGCCGAGCGAGGAAGACGTAA
AA sequence Show only first row Show all	>Potri.006G277500.3 pacid=42767864 polypeptide=Potri.006G277500.3.p locus=Potri.006G277500 ID=Potri.006G277500.3.v4.1 annot-version=v4.1 MAIFCHTLSSLSLKKLINPSKPTSTFTYINLHIRFQAMNSISDSSSSSSSKVMCQLVPGLDTNEKEYILDQTFERYTSKMVKRNGKGAAIVWFRNDLRVL DNEVLFKAWVNSESVLPVYCVDPRLFQASTCYFGFPKTGGLRGQFIVECLVDLKKNLMKRGLNLLIRHGKPEEIIPALAKDFASHTVYAQKETCSEEVNV EKLVSKALRRVHLPHSTGRSTSQGSANSPTLQLVWGGTMYHLDDLPFSTNSIPDVYTQFRKSVEARCSIRSCAKISMSLGPAPRVEDWGCVPSIEQLGLQ PQEVSKGMRFLGGETAALSRVYEYFWKKDFLKIYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYEKGRLANDSTYWVLFELIWRDYFRFISFK YGNSIFHIGGPRNVERRWSQDQRLFDSWRNGCTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETFLLDYDPCSNYGNWTYGAGV GNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLQELPKEKRNFPGKLYMEQIVPLKFGNPNGHRGQDRASAARKTNYGGRARKT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	3.74	0.9538
AT1G19920		ASA1, APS2	ATP SULFURYLASE ARABIDOPSIS 1,...		Potri.005G237300 [exp]	4.24	0.9520
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	4.69	0.9134
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	7.74	0.9341	Pt-SDD1.1
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	8.06	0.9274
					Potri.015G143150 [exp]	8.36	0.9431
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	8.36	0.9389
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Potri.001G424700 [exp]	10.19	0.9444
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	10.95	0.9353
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G013100 [exp]	11.66	0.9182

Compare expression of checked genes

Potri.006G277500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.