Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24800 222 / 1e-71 bZIP BZO2H2, ATBZIP9 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) AT5G28770 89 / 2e-20 bZIP BZO2H3, ATBZIP63 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) AT4G02640 80 / 1e-16 bZIP BZO2H1, AT4G02640, ATBZIP10 Arabidopsis thaliana basic leucine zipper 10, bZIP transcription factor family protein (.1.2) AT3G54620 67 / 3e-12 bZIP BZO2H4, ATBZIP25 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) AT1G75390 62 / 1e-11 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT4G34590 62 / 1e-11 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT2G18160 59 / 2e-10 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT3G30530 57 / 9e-10 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT2G04038 54 / 8e-09 bZIP ATBZIP48 basic leucine-zipper 48 (.1) AT3G62420 53 / 1e-08 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040700 [exp] 86 / 2e-18 AT5G28770 234 / 9e-74 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.005G053200 [exp] 84 / 4e-18 AT5G28770 223 / 1e-69 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Potri.002G045800 [exp] 69 / 6e-13 AT3G54620 123 / 1e-30 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.005G217500 [exp] 67 / 3e-12 AT3G54620 160 / 2e-44 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Potri.004G158200 [exp] 63 / 4e-12 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 61 / 3e-11 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.007G006900 [exp] 61 / 1e-10 AT2G22850 118 / 1e-32 basic leucine-zipper 6 (.1.2) Potri.017G106700 [exp] 56 / 2e-09 AT3G30530 169 / 1e-53 basic leucine-zipper 42 (.1) Potri.014G007100 [exp] 56 / 3e-09 AT3G49760 120 / 6e-35 basic leucine-zipper 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026973 [exp] 218 / 4e-69 AT5G24800 191 / 6e-59 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10020170 [exp] 137 / 1e-38 AT5G24800 148 / 3e-43 BASIC LEUCINE ZIPPER O2 HOMOLOG 2, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, basic leucine zipper 9 (.1) Lus10006590 [exp] 92 / 1e-20 AT5G28770 260 / 2e-84 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10015913 [exp] 91 / 2e-20 AT5G28770 244 / 7e-78 Arabidopsis thaliana basic leucine zipper 63, bZIP transcription factor family protein (.1.2.3) Lus10018759 [exp] 67 / 4e-12 AT3G54620 182 / 1e-52 BASIC LEUCINE ZIPPER O2 HOMOLOG 4, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 25, basic leucine zipper 25 (.1.2.3) Lus10024279 [exp] 60 / 7e-11 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 58 / 6e-10 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 58 / 6e-10 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10011722 [exp] 58 / 1e-09 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1) Lus10029101 [exp] 57 / 3e-09 AT3G30530 148 / 5e-45 basic leucine-zipper 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.006G277800.6 pacid=42767142 polypeptide=Potri.006G277800.6.p locus=Potri.006G277800 ID=Potri.006G277800.6.v4.1 annot-version=v4.1 ATGGAGGAGCAGAAAGCAGGAGGAAGTGATGGGATGAAGAAAAGTGAGTCAGAATTGGCTGATTTTTCTGCTGAGATTTATGGCTTCTTCAGTGATATTT TTTCTGGTGATCTTTCTTCTTTCCCTGTCAACAAAACTCGGGACATCGTGAATGGTTTCTCAACTTGTGGTGGATTAACAGAATCCTGCTTCCTCTGGTC TCAAAATACCAATCCCAAGAATTCCAGTGTTTCAGTGTCTACTGATGCCCAGTCATCACTTTGTGTTGGCAGTCCAATGTCTGCTAATAAACCAAGAGTG AAAGATAGCCAAACTAGAGTTGCTGCCAGTGTTTCGTCTCCTGACCAATCAGATGAAGATGGTCTGTCTGAGCAGAGCACAAACCCTCATGACATAAAAC GTATTAGAAGGATGGTTTCGAATAGGGAGTCGGCTAGACGATCGAGAAAAAGAAAACAAGCACATTTATCAGATCTTGAAGTTCAGGTTGATCATATGAC AGGAGAAAATGCATCTCTATTCAAGCAACTTTCAGATGCTACCCAACAATTTCGTACTGCTGAAACAAATCGTCGTGTGCTTAACTCAGATGTTGAAGCT TTGAGAGCCAAGGTGAAGTTAGCAGAAGATATGGTTGCTCGAGGTTCATTGACGTGTAATAATTTGAATCAATTTCTTCAGAGTCATCTAACTTCTCCTC AACTGCTCAATAATCATAACTTACATCTGATGCCAAATGTCTCACCAACTATAACAATCCAGGGAGATGAAGCATATGCCGGAATGTCAGTTTCGGGACA GAATTCAGGACTTGGACTTGGAAGTGCAGATATCAGCAATGGCAATCTTAATAATGGCATCTTAAGTGATGCAGCAAGCTGTATAACAAACATTTGGTCT TAA
AA sequence Show only first row Show all	>Potri.006G277800.6 pacid=42767142 polypeptide=Potri.006G277800.6.p locus=Potri.006G277800 ID=Potri.006G277800.6.v4.1 annot-version=v4.1 MEEQKAGGSDGMKKSESELADFSAEIYGFFSDIFSGDLSSFPVNKTRDIVNGFSTCGGLTESCFLWSQNTNPKNSSVSVSTDAQSSLCVGSPMSANKPRV KDSQTRVAASVSSPDQSDEDGLSEQSTNPHDIKRIRRMVSNRESARRSRKRKQAHLSDLEVQVDHMTGENASLFKQLSDATQQFRTAETNRRVLNSDVEA LRAKVKLAEDMVARGSLTCNNLNQFLQSHLTSPQLLNNHNLHLMPNVSPTITIQGDEAYAGMSVSGQNSGLGLGSADISNGNLNNGILSDAASCITNIWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24800	bZIP	BZO2H2, ATBZIP9	BASIC LEUCINE ZIPPER O2 HOMOLO...		Potri.006G277800 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165300 [exp]	2.00	0.9370
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	3.46	0.9162
AT2G05910			Protein of unknown function (D...		Potri.006G140900 [exp]	7.34	0.8970
AT1G29520			AWPM-19-like family protein (....		Potri.001G354500 [exp]	8.66	0.9020
AT4G20820			FAD-binding Berberine family p...		Potri.011G162916 [exp]	14.49	0.8847
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047950 [exp]	14.56	0.9037
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G426030 [exp]	20.00	0.8850
					Potri.001G425366 [exp]	21.44	0.8956
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	22.62	0.8769
AT1G11925			Stigma-specific Stig1 family p...		Potri.008G220900 [exp]	24.10	0.8992

Compare expression of checked genes

Potri.006G277800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.