Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29150 498 / 1e-175 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) AT2G26990 50 / 2e-06 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164200 [exp] 532 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.013G020300 [exp] 530 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 516 / 0 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.009G020900 [exp] 57 / 1e-08 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.001G222700 [exp] 57 / 1e-08 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037125 [exp] 551 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10036805 [exp] 549 / 0 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 545 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 313 / 8e-104 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10012998 [exp] 66 / 8e-13 ND 44 / 4e-06 Lus10029167 [exp] 61 / 1e-11 AT1G29150 77 / 1e-18 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10037417 [exp] 54 / 2e-07 AT2G26990 799 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041295 [exp] 53 / 2e-07 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF01399 [poplar] [flax] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Potri.006G277900.2 pacid=42768030 polypeptide=Potri.006G277900.2.p locus=Potri.006G277900 ID=Potri.006G277900.2.v4.1 annot-version=v4.1 ATGTTGCACTGCCCCCCATTTAGCATTGCCGATTGTCTGAGTCTCCCTCTCTGTCCGATCACTCCCTCTTTACTTCTTCTGCAAGCTGCAGCTATGACTG CATCATATCTTCCAGCGACAACAGACTCAATTGCTCTGGCTTCAAAAGCTGAGGACCCATTTGAGGCCATTTCCATCCTACACAAAATACTTGAAAACCC TTCTTCTTCTCCGGATGCAATTCGCATAAAGGAACAGGCCATTACCATTCTATCGGACCTTTTCACACAACATAACATGGCTGAGGATCTTCACGCTCTT CTCTCTCAGTTGATGCCTTTCTTTGCCGTGATCCCAAAGGCTAAAACTGCCAAAATCGTCAGGGGAATAATCGACTCTGTTTCCAAAATACCTGGAACAT CTGATGTCCAAATTGCTCTTTGCAAAGAACTAGTGCTGTGGGCTCGTGCCGAAAAGCGTGCTCTCCTGAGGCAGCGAGTTGAGACAAGGCTTGCAGCTCT TTTAGTGGAAACTAAGGAGTATTCGGAGGCACTGGCCCTGCTTACCAACTTGGTAAAAGAGGTAAAGGGAGTGGATCACAAGCGACTTCTTGTGGAAATA CTCTTGCTTGAGAGTAAGCTACACTATTTGTTGAAGGACCGTCACAAGGCGAGAACTGCTCTCACAGCTGCTAAGAAAGCTGCGAATGCTGTCTATATGC CACCAACTCAACAAGGTGCCATTGATTTGCATAGTGGGATTCTCTTTGCTGAGGACAAGGAGTATACAACAGCTTATAGCTATTTCTTTGAAGCATTTGA GGCATTCAAAGCTGTTGAAGACCCAAGAGCAATTTTCAGTCTTAAATACATGCTATTGTGCAAGATCATGACGAACCAATCTAAAGATGTTGCTGGGCTG ATTTCTTCTAAGGCAGGCCTTAAATATTTTGGGCCAGAACTGAATGTCATGAAAGCAGTCGCCGATGCTCATTCCAACCGATCTTTGAGGTCCTTTGAAA AGGTGCTGCGGGATTACAGGTATCAGCTGGAGACAGACCCAACTATCTACAATCATCTCTCATCCCGTTATGAAGCTCTTGTGGAACTAAACCTGTGTAG ATATATTGAGCCTTTCTCAAGGGTCGAGATTCCACACATTGCTGGGCTGATTGATTTGCCTGTTGACTTTGTGGAGAAAAAGCTGGCACAAATGATTCTG GACAGGAAGTTTGTTGGGATACTGGACCAAGGTGCTGGACATATCATAATATTTGATGAACCCAAGAAGGATGCTCTCCTCCCTGCAGCTCTGAAAACCA TCTCCAGCATTGGCAAGGTTGTGGACAGCCTTTTTGTCAAATCTTCCAAGATTGTGCACTGA
AA sequence Show only first row Show all	>Potri.006G277900.2 pacid=42768030 polypeptide=Potri.006G277900.2.p locus=Potri.006G277900 ID=Potri.006G277900.2.v4.1 annot-version=v4.1 MLHCPPFSIADCLSLPLCPITPSLLLLQAAAMTASYLPATTDSIALASKAEDPFEAISILHKILENPSSSPDAIRIKEQAITILSDLFTQHNMAEDLHAL LSQLMPFFAVIPKAKTAKIVRGIIDSVSKIPGTSDVQIALCKELVLWARAEKRALLRQRVETRLAALLVETKEYSEALALLTNLVKEVKGVDHKRLLVEI LLLESKLHYLLKDRHKARTALTAAKKAANAVYMPPTQQGAIDLHSGILFAEDKEYTTAYSYFFEAFEAFKAVEDPRAIFSLKYMLLCKIMTNQSKDVAGL ISSKAGLKYFGPELNVMKAVADAHSNRSLRSFEKVLRDYRYQLETDPTIYNHLSSRYEALVELNLCRYIEPFSRVEIPHIAGLIDLPVDFVEKKLAQMIL DRKFVGILDQGAGHIIIFDEPKKDALLPAALKTISSIGKVVDSLFVKSSKIVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.006G277900 [exp]	0	1
AT5G28780			PIF1 helicase (.1)		Potri.001G185950 [exp]	12.68	0.6023
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107350 [exp]	18.89	0.5698
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	28.28	0.5922	Pt-EXP2.8,PtrEXPA2
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	29.47	0.5913
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	30.98	0.5708	AGA1.1
AT4G17690			Peroxidase superfamily protein...		Potri.012G076500 [exp]	34.20	0.5473
					Potri.006G103800 [exp]	37.73	0.5789
AT5G05800			unknown protein		Potri.004G230401 [exp]	49.18	0.5410
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	60.44	0.5798
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.006G261200 [exp]	63.27	0.5692	PPLZ02.2

Compare expression of checked genes

Potri.006G277900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.