Plant FIBer expression Database

Potri.006G278500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G10620 283 / 2e-98 methyltransferases (.1)
AT5G10605 62 / 3e-13 methyltransferases (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020175
[exp]
255 / 2e-87 AT5G10620 236 / 3e-80 methyltransferases (.1)
Lus10026980
[exp]
245 / 1e-83 AT5G10620 225 / 5e-76 methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF02590 SPOUT_MTase Predicted SPOUT methyltransferase
Representative CDS sequence
>Potri.006G278500.3 pacid=42769596 polypeptide=Potri.006G278500.3.p locus=Potri.006G278500 ID=Potri.006G278500.3.v4.1 annot-version=v4.1
ATGGCTATAATCTCAGCTTGTGCTTCAACCAGTTGCTACACTCCTCCTCCCTCAGGAGGAGAAGGTAGACTGTGCAAGTACACCGGTCAGTCAGTGAGAG
CGTTACCTATAAGAATTATAACAGTGGGCAAAAAGAGATCAGCTGGGGTACAATTATTAGTGGAAGAATACACTAACAAGCTCAAAAACTATTGCTCTCT
TCATGATCTTCCTATTCGGTCCAACCCCAGAAATGCTCGTGATGAGAAGGCTCAGGTTGATGATGAAGACAAGGCAGTCATGAACCTTATCAGGTCTGAT
GATTGGGTTGTCCTGTTGGATGAGCGTGGACGGGACATTGGGTCCGAGCAGATGGCTGAATTGATCGGGGATGCAGGGAACACGGGAGCTTCTAGGTTAT
CATTCTGCATTGGTGGACCGTATGGTCATGGGCAACAAATACGAAAGCGTGCTAACATATCGATTAGATTGTCCTCCATGGTTTTGAATCATCAGATTGC
ATTGCTTGTGCTTGTTGAACAACTGTATAGGTCATGGACGATTCTGAAGGGGCAAAATTACCATCATTAA
AA sequence
>Potri.006G278500.3 pacid=42769596 polypeptide=Potri.006G278500.3.p locus=Potri.006G278500 ID=Potri.006G278500.3.v4.1 annot-version=v4.1
MAIISACASTSCYTPPPSGGEGRLCKYTGQSVRALPIRIITVGKKRSAGVQLLVEEYTNKLKNYCSLHDLPIRSNPRNARDEKAQVDDEDKAVMNLIRSD
DWVVLLDERGRDIGSEQMAELIGDAGNTGASRLSFCIGGPYGHGQQIRKRANISIRLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10620 methyltransferases (.1) Potri.006G278500
[exp]
0 1
AT3G18140 Transducin/WD40 repeat-like su... Potri.016G052800
[exp]
1.00 0.9313
AT5G30495 Fcf2 pre-rRNA processing prote... Potri.010G002100
[exp]
1.73 0.9090
AT1G22940 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING ... Potri.003G015700
[exp]
5.83 0.8552 Pt-TH1.1
AT4G05440 EDA35 embryo sac development arrest ... Potri.017G048600
[exp]
6.63 0.8793
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.001G359400
[exp]
6.92 0.8666
AT3G26782 Tetratricopeptide repeat (TPR)... Potri.001G322100
[exp]
7.41 0.8785
AT1G78420 RING/U-box superfamily protein... Potri.011G096000
[exp]
8.36 0.8613
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.004G030000
[exp]
8.48 0.8752
AT5G20400 2-oxoglutarate (2OG) and Fe(II... Potri.006G062400
[exp]
9.53 0.8613
AT4G29540 AtLpxA bacterial transferase hexapept... Potri.006G150200
[exp]
9.59 0.8225

Potri.006G278500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.