Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06470 542 / 0 Nucleotide/sugar transporter family protein (.1.2) AT1G53660 105 / 4e-25 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G17430 93 / 9e-21 Nucleotide-sugar transporter family protein (.1) AT2G25520 90 / 1e-19 Drug/metabolite transporter superfamily protein (.1) AT5G25400 89 / 1e-19 Nucleotide-sugar transporter family protein (.1) AT4G32390 88 / 3e-19 Nucleotide-sugar transporter family protein (.1) AT3G14410 88 / 4e-19 Nucleotide/sugar transporter family protein (.1) AT5G11230 88 / 6e-19 Nucleotide-sugar transporter family protein (.1) AT1G48230 75 / 1e-14 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G77610 73 / 5e-14 EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G394500 [exp] 111 / 2e-27 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.006G252500 [exp] 91 / 3e-20 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.018G028900 [exp] 90 / 1e-19 AT4G32390 568 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 89 / 2e-19 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 87 / 1e-18 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 81 / 1e-16 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 73 / 5e-14 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.010G194100 [exp] 65 / 2e-11 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 65 / 2e-11 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010954 [exp] 568 / 0 AT1G06470 554 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10031370 [exp] 265 / 1e-85 AT1G06470 356 / 3e-121 Nucleotide/sugar transporter family protein (.1.2) Lus10002023 [exp] 89 / 4e-19 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002904 [exp] 88 / 5e-19 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 86 / 2e-18 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10018339 [exp] 80 / 5e-16 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 77 / 2e-15 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10042700 [exp] 74 / 2e-14 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10029663 [exp] 70 / 1e-12 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10009878 [exp] 65 / 2e-11 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G278700.3 pacid=42768955 polypeptide=Potri.006G278700.3.p locus=Potri.006G278700 ID=Potri.006G278700.3.v4.1 annot-version=v4.1 ATGGAATTGAATGGCTGTAATTTAGAGAACAGAAACAGAGGGAGTCATGATGATTCTGAAGAAGACAAGTGCGTTCCCTTCGACATTGAAAACTCTAGGA GGAGGAATTCTGATGTCGATTCCGATGTCAATGGCATCGCCATGGATTCTTTGTCGGTTAAGAAGTCTCCTCCTACTCCTGTATCTGCTGCTGATATTTT GAAGACTCTGTTTTTTATTCTTGTTTGGTACACTTTCAGCACTTTTTTAACCTTGTACAATAAGACTCTGTTAGGAGATGATATGGGGAGATTTCCAGCT CCGTTGCTGATGAATACTTTCCATTTCACAATGCAAGCTGTTTTATCCACGGCTATTACTTGGTACTGGTCTGATCGGTTTCGGCCGAATGTTGCTATGT CGTGGAAGGATTATTTTATAAGAGTTGTACCAACAGCTCTTGGAACTGCATTCGATGTTAACTTGAGCAATGTGTCCCTTGTTTTCATCTCTGTTACATT TGCCACAATGTGTAAATCTGCAGCTCCAATATTTCTCATTCTATTTGCCTTTGCATTCAGGTTGGAATCTCCAAGCGCTAAGCTTTTTGGTATCATCATG GTAATCTCTGTTGGAATTTTATTAACAGTTGCGAAAGAGACAGAATTTGAGTTTTGGGGCTTTGTATTTGTTATGCTTGCTGCTGTAATGTCTGGATTTC GCTGGTGCATGACTCAAATTCTCTTGCAGAAAGAAGCATATGGTTTGAAAAATCCACTTACATTGATGAGCTATGTCACTCCAGTGATGGCAATTTCAAC CGGTCTTCTTTCTCTTGTCTTAGATCCATGGCATGAATTTAACAAAACAAGTTACTTCAATAATTCATGGCATGTTGCTCGGAGTTGCCTGCTCATGTTT TTTGGGGGAACACTCGCTTTTTTCATGGTTTTAACGGAGTTTGTTCTTATTTCAGTAACTAGTGCCGTCACAGTGACAATAGCTGGTGTTGTCAAGGAGG CTGTGACTATATTGGTTGCGGTTATTTATTTCCATGATAAATTTACCTGGTTGAAAGGTGCTGGGCTTTTGATTATTATGGTTGGTGTCGGCTTATTCAA CTGGTACAAGTACCAAAAGCTACAGAAGGGCCAAACAAGTGAAAATGACTCGGCTGGGTCATCCCCAACAAATGTTGCAACGAAGTATGTTATCCTTGAT GAGATGGATGATCTAGATGATGGCACTTGA
AA sequence Show only first row Show all	>Potri.006G278700.3 pacid=42768955 polypeptide=Potri.006G278700.3.p locus=Potri.006G278700 ID=Potri.006G278700.3.v4.1 annot-version=v4.1 MELNGCNLENRNRGSHDDSEEDKCVPFDIENSRRRNSDVDSDVNGIAMDSLSVKKSPPTPVSAADILKTLFFILVWYTFSTFLTLYNKTLLGDDMGRFPA PLLMNTFHFTMQAVLSTAITWYWSDRFRPNVAMSWKDYFIRVVPTALGTAFDVNLSNVSLVFISVTFATMCKSAAPIFLILFAFAFRLESPSAKLFGIIM VISVGILLTVAKETEFEFWGFVFVMLAAVMSGFRWCMTQILLQKEAYGLKNPLTLMSYVTPVMAISTGLLSLVLDPWHEFNKTSYFNNSWHVARSCLLMF FGGTLAFFMVLTEFVLISVTSAVTVTIAGVVKEAVTILVAVIYFHDKFTWLKGAGLLIIMVGVGLFNWYKYQKLQKGQTSENDSAGSSPTNVATKYVILD EMDDLDDGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06470			Nucleotide/sugar transporter f...		Potri.006G278700 [exp]	0	1
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	1.73	0.9478
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	3.00	0.9457
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	3.16	0.9469
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.016G033200 [exp]	3.31	0.9175
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.009G119500 [exp]	3.46	0.9169
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Potri.001G354900 [exp]	3.87	0.9300
AT3G19260		LOH2, LAG1 HOMO...	LONGEVITY ASSURANCE GENE1 HOMO...		Potri.004G141000 [exp]	8.36	0.8921	HOMOLOG.1
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	9.16	0.9321
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	9.94	0.9188	FUT13.1
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	10.09	0.9134

Compare expression of checked genes

Potri.006G278700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.