Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24390 194 / 5e-64 AIG2-like (avirulence induced gene) family protein (.1), AIG2-like (avirulence induced gene) family protein (.2), AIG2-like (avirulence induced gene) family protein (.3) AT4G31310 190 / 3e-62 AIG2-like (avirulence induced gene) family protein (.1) AT5G39730 149 / 4e-46 AIG2-like (avirulence induced gene) family protein (.1) AT3G28940 143 / 8e-44 AIG2-like (avirulence induced gene) family protein (.1) AT3G28950 142 / 2e-43 AIG2-like (avirulence induced gene) family protein (.1) AT3G28930 141 / 3e-43 AIG2 AVRRPT2-INDUCED GENE 2, AIG2-like (avirulence induced gene) family protein (.1) AT5G39720 140 / 1e-42 AIG2L avirulence induced gene 2 like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003000 [exp] 316 / 4e-112 AT2G24390 191 / 8e-63 AIG2-like (avirulence induced gene) family protein (.1), AIG2-like (avirulence induced gene) family protein (.2), AIG2-like (avirulence induced gene) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026984 [exp] 184 / 2e-57 AT4G31300 357 / 2e-124 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10020179 [exp] 133 / 2e-40 AT4G31310 115 / 2e-33 AIG2-like (avirulence induced gene) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [poplar] [flax] AIG2 PF06094 [poplar] [flax] GGACT Gamma-glutamyl cyclotransferase, AIG2-like
Representative CDS sequence Show only first row Show all	>Potri.006G278900.1 pacid=42770069 polypeptide=Potri.006G278900.1.p locus=Potri.006G278900 ID=Potri.006G278900.1.v4.1 annot-version=v4.1 ATGGCAATGGCGGCAGCAGCAGGCGGCAATCAGGTCCACAACGTGTTTGTGTACGGCAGCCTTCTTGCTGATGACGTTGTTCGTGCCCTCTTGAGTCGCA TCCCTCAATCCTCTCCAGCCATCCTCAACGGCTATCACAGGTTTAGCATAAAAGGGCGTGTCTACCCTGCAATTTTACCTGTGGAGAACAAGAAAGTCTC AGGCAAGGTTCTACATGGCATCACGGATCCAGAATTATACATTTTAGATGAATATGAGGATGTTGAGTATGAAAGAGTCACTGTTGATGTTTCTTTGATG GACAATTCTAATAAGACACAAGCACTTGCTTATGTTTGGTCAGACAAAAATGACCCCAACTTGTATGGGGAATGGGATTTTGAGGAATGGAAAAGGACAC AGATGGAGGATTTTGCCAAGATGTCTGCTGAGTTTAGGCAAGATCTTGAGCAGCCTGAATCAAAGACAAGAATAGCCACTTATGAATCCTTCTATCAGCA GGATGGCGGTCGTCCCCTCATGCCCTGA
AA sequence Show only first row Show all	>Potri.006G278900.1 pacid=42770069 polypeptide=Potri.006G278900.1.p locus=Potri.006G278900 ID=Potri.006G278900.1.v4.1 annot-version=v4.1 MAMAAAAGGNQVHNVFVYGSLLADDVVRALLSRIPQSSPAILNGYHRFSIKGRVYPAILPVENKKVSGKVLHGITDPELYILDEYEDVEYERVTVDVSLM DNSNKTQALAYVWSDKNDPNLYGEWDFEEWKRTQMEDFAKMSAEFRQDLEQPESKTRIATYESFYQQDGGRPLMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	0	1
AT1G31335			unknown protein		Potri.006G127000 [exp]	1.41	0.9149
AT4G19140			unknown protein		Potri.001G130900 [exp]	2.82	0.8905
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	3.46	0.9099
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	5.47	0.8903
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.009G021200 [exp]	5.74	0.8549
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	6.32	0.8653
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	8.66	0.8495
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	8.71	0.8387
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.009G131500 [exp]	8.83	0.8263	Pt-SEN1.2
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	9.00	0.8634

Compare expression of checked genes

Potri.006G278900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.