Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31290 328 / 5e-115 ChaC-like family protein (.1) AT5G26220 320 / 2e-112 ChaC-like family protein (.1) AT1G44790 197 / 4e-64 ChaC-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002900 [exp] 433 / 5e-157 AT4G31290 332 / 1e-116 ChaC-like family protein (.1) Potri.005G176300 [exp] 210 / 3e-69 AT1G44790 289 / 9e-101 ChaC-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020181 [exp] 345 / 2e-121 AT4G31290 342 / 2e-120 ChaC-like family protein (.1) Lus10026985 [exp] 333 / 2e-116 AT4G31290 332 / 5e-116 ChaC-like family protein (.1) Lus10003737 [exp] 196 / 7e-63 AT1G44790 275 / 2e-94 ChaC-like family protein (.1) Lus10028029 [exp] 181 / 9e-57 AT1G44790 257 / 4e-87 ChaC-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0278 [poplar] [flax] AIG2 PF04752 [poplar] [flax] ChaC ChaC-like protein
Representative CDS sequence Show only first row Show all	>Potri.006G279000.1 pacid=42770134 polypeptide=Potri.006G279000.1.p locus=Potri.006G279000 ID=Potri.006G279000.1.v4.1 annot-version=v4.1 ATGGTTTTCTGGGTTTTTGGCTATGGTTCATTGGTGTGGAACCCAGGTTTTGAATATGATGAGAAAGTGATTGGCTTTATCAAGGACTACAGGCGTGTTT TTGATCTTGCTTGCATTGATCACAGAGGTACACCTGAAAGTCCTGCAAGAACTTGCACGTTGGAAAATGTTGAAGGAGCTATTTGCTGGGGAGCTGCTTA TTGTGTTCGGGGAGGTCCTGAAAGGGAAAGATTGGCAATGGAGTATTTGGAAAGGAGAGAATGCGAATATGATAAAAAGACCCTCGTAGACTTTGACAAG GAAGGGGAACCCTCGGAGCCTGCTTTAACTGGAGTTATAGTTTTTACTTCCACTCCAGACAAGGTATCAAACAAGTACTACCTTGGGCCTGCCCCGTTGG AGGAAATGGCTAGGCAAATTGCAACTGCTCATGGACCATGCGGGAACAACAGAGACTATCTGTTCTCGCTAGAAAGAGCCATGTTTGCTATAGGTCATGA AGATGACACGGTGATTGAACTGGCAAAAGAGGTGAGGAGGGTTCTTGGAACTAAAGGGAATGGAATTCCCGTGGAGAAGAAGATATCTGGGTCATCCCCA GCTGCTCTCAAATCCCACATGCCAGCCCTTCAACTTCGTTCACTTCAAGAAGCAGTCGTGATGGACTCTTAA
AA sequence Show only first row Show all	>Potri.006G279000.1 pacid=42770134 polypeptide=Potri.006G279000.1.p locus=Potri.006G279000 ID=Potri.006G279000.1.v4.1 annot-version=v4.1 MVFWVFGYGSLVWNPGFEYDEKVIGFIKDYRRVFDLACIDHRGTPESPARTCTLENVEGAICWGAAYCVRGGPERERLAMEYLERRECEYDKKTLVDFDK EGEPSEPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAHGPCGNNRDYLFSLERAMFAIGHEDDTVIELAKEVRRVLGTKGNGIPVEKKISGSSP AALKSHMPALQLRSLQEAVVMDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31290			ChaC-like family protein (.1)		Potri.006G279000 [exp]	0	1
AT5G16290		VAT1	VALINE-TOLERANT 1 (.1.2)		Potri.010G178200 [exp]	8.71	0.6413
					Potri.012G073800 [exp]	15.16	0.6307
AT1G64355			unknown protein		Potri.001G093001 [exp]	35.21	0.5918
AT4G31290			ChaC-like family protein (.1)		Potri.018G002900 [exp]	38.72	0.5676
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.016G113300 [exp]	61.50	0.5550
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.012G047301 [exp]	62.22	0.5332
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G248400 [exp]	66.34	0.4981
					Potri.005G127650 [exp]	74.53	0.5087
AT1G57680			unknown protein		Potri.004G227000 [exp]	110.75	0.4776
AT3G17430			Nucleotide-sugar transporter f...		Potri.008G214300 [exp]	135.63	0.4978

Compare expression of checked genes

Potri.006G279000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.