Plant FIBer expression Database

Potri.006G279100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31270 144 / 1e-39 Trihelix sequence-specific DNA binding transcription factors (.1)
AT2G33550 62 / 1e-10 Trihelix Homeodomain-like superfamily protein (.1)
AT2G35640 46 / 3e-05 Trihelix Homeodomain-like superfamily protein (.1)
AT1G31310 44 / 0.0003 Trihelix hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G002801
[exp]
513 / 0 AT4G31270 154 / 4e-43 sequence-specific DNA binding transcription factors (.1)
Potri.015G105800
[exp]
61 / 8e-10 AT2G33550 187 / 9e-57 Homeodomain-like superfamily protein (.1)
Potri.003G163000
[exp]
58 / 4e-09 AT2G33550 340 / 9e-117 Homeodomain-like superfamily protein (.1)
Potri.001G066900
[exp]
57 / 1e-08 AT2G33550 328 / 4e-112 Homeodomain-like superfamily protein (.1)
Potri.012G117500
[exp]
51 / 1e-06 AT2G35640 184 / 2e-55 Homeodomain-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020182
[exp]
133 / 5e-34 AT4G31270 144 / 1e-39 sequence-specific DNA binding transcription factors (.1)
Lus10026986
[exp]
133 / 5e-34 AT4G31270 149 / 3e-41 sequence-specific DNA binding transcription factors (.1)
Lus10041120
[exp]
117 / 4e-29 AT4G31270 98 / 3e-23 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence
>Potri.006G279100.1 pacid=42769982 polypeptide=Potri.006G279100.1.p locus=Potri.006G279100 ID=Potri.006G279100.1.v4.1 annot-version=v4.1
ATGGAGGTAATTGTTAATAAGAAGAAGCGTAGAAAGGAACAACGAGAGAGCAAGAATAATAATCAATTGCGTGTTTCTTCGAGCACTCCACGCACGCGTT
CTCAGGTATCCCCGGAGTGGACAACTAAAGAAGCGTTGATTCTAGTGAATGAGATCGCTGCTGTTGAAAAGGATTGTTTGAAAGCTTTATCTACCTATCA
GAAATGGAAGATCATTGTCGATAACTGCGTTGTCCTGGATGTTGCCCGGAATTTGAATCAATGTCGGACTAAGTGGAACTCCTTGGTTAATGAGTACAAC
CTGATTAAAAATTGGGACAAGGAGTCTGAGTCCCGGAGTGACTTCTATTGGTCTTTGGAGAGTGAAAGGAGAAGGGAGTTCGGACTTCCTGAGAATTTTA
ATGATGAACTTTTCAGAGCTATTGATGATTATATGTGGTGCCACAAGGAACACCCAGATACGGATCCGGATCCAGATCCAGATCCAGATACTGACTCTGA
AAAGCCTGACTTGCTTCATGCAATAACAAACCCCGGGACCAAGAAACAAAGGTGGCGGTCAAAGTCTCTGAGAACCCCTATGGAAGAAAAGACACACAAA
TGCTGCAGAGAGGATAACTCTCAAACAATCCATGCAGAAGAGAAACCTCAGGAAAGATGTGTGGAAGAAAATTCTCAGATATACTGCACAGTGGAAAAGC
CTCAGAGAGTCCATGCTGAAGAAGAACATCAGGAAAGTCAGGTGCAAGAAAGCACTCAGATATACAATGCTGGGGGAAAGCTTCAGACAATCCATGCAGA
AGAGGATCCTCAGGAAAGTTGTGCAGAAGAAGAACCTCATACTATCCATGCAGAAGAGGAACCTGAGGAAAGCCCTGCGGAAGAGCACCCTCAGCCATGC
TGCTCAAAGGAAAAGCCTCGGGCAATCCATTTAGAAGAGGAAACTCAGGAAAGATATTTGGAAGAAAATCATCAGACATGCTGCACAAATGAAAAGCCTC
AGTCAATCCTTGCAGAAACACAACTTCAGGAAAGTCACGAGGAAGAAAAGCCTCAGAAATGCCGTAGAAAAGAAAATTCTCAAAATGCCCATGGGGATGA
GAAGCCTAAAATCCATCGTGGACGTAAAAAGAAAATGCCCAGCACAGAAGAGATGAAGCAAATGATGGTGGAAAAACTTCATGAGAATGCTGAAATGATC
CAGGCTGTAGTTAATGGCAACTTTCCTGAGATGGCAGACCTCGAAGCTGCTGATTCAAAGAACATCGAGGGCTTCAAAACTGACCTTATAAGACGTCAAG
GGGACAAGCTTATTGCATGCCTTCAAAATATTGTCAACAGTATTAACCAGTTCCCATGTCTTCTCCAAGAATGTGACTAG
AA sequence
>Potri.006G279100.1 pacid=42769982 polypeptide=Potri.006G279100.1.p locus=Potri.006G279100 ID=Potri.006G279100.1.v4.1 annot-version=v4.1
MEVIVNKKKRRKEQRESKNNNQLRVSSSTPRTRSQVSPEWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNLNQCRTKWNSLVNEYN
LIKNWDKESESRSDFYWSLESERRREFGLPENFNDELFRAIDDYMWCHKEHPDTDPDPDPDPDTDSEKPDLLHAITNPGTKKQRWRSKSLRTPMEEKTHK
CCREDNSQTIHAEEKPQERCVEENSQIYCTVEKPQRVHAEEEHQESQVQESTQIYNAGGKLQTIHAEEDPQESCAEEEPHTIHAEEEPEESPAEEHPQPC
CSKEKPRAIHLEEETQERYLEENHQTCCTNEKPQSILAETQLQESHEEEKPQKCRRKENSQNAHGDEKPKIHRGRKKKMPSTEEMKQMMVEKLHENAEMI
QAVVNGNFPEMADLEAADSKNIEGFKTDLIRRQGDKLIACLQNIVNSINQFPCLLQECD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31270 Trihelix sequence-specific DNA binding ... Potri.006G279100
[exp]
0 1
AT5G42440 Protein kinase superfamily pro... Potri.005G195500
[exp]
2.82 0.7234
AT4G24220 5[beta]-StR, 5[... VEIN PATTERNING 1, Δ4,5-s... Potri.017G030700
[exp]
4.24 0.7457
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.004G168100
[exp]
6.48 0.7566
AT1G01730 unknown protein Potri.014G082600
[exp]
9.79 0.7009
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.004G074100
[exp]
10.58 0.7262
AT1G63770 Peptidase M1 family protein (.... Potri.003G129500
[exp]
12.48 0.6994
AT3G49050 alpha/beta-Hydrolases superfam... Potri.015G145900
[exp]
13.85 0.7436
AT2G01350 QPT quinolinate phoshoribosyltrans... Potri.008G128900
[exp]
17.97 0.6694
AT1G36390 Co-chaperone GrpE family prote... Potri.005G171201
[exp]
21.54 0.6305
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
22.80 0.6588

Potri.006G279100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.