Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31250 569 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G20190 546 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 405 / 2e-133 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT5G35390 403 / 3e-132 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 389 / 5e-127 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 380 / 5e-123 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 314 / 5e-98 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 301 / 4e-93 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G16590 299 / 8e-93 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT5G20690 293 / 4e-90 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002600 [exp] 991 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 580 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G078600 [exp] 576 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 562 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 542 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 395 / 6e-133 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 385 / 7e-126 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 354 / 9e-114 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 344 / 9e-110 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020183 [exp] 646 / 0 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 484 / 1e-163 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034795 [exp] 417 / 3e-140 AT3G20190 445 / 1e-150 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 388 / 1e-128 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10037297 [exp] 373 / 6e-125 AT3G20190 420 / 3e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10027597 [exp] 367 / 7e-118 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033339 [exp] 362 / 2e-116 AT3G20190 600 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022946 [exp] 359 / 8e-115 AT5G35390 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 358 / 8e-115 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 355 / 8e-113 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G279300.1 pacid=42767717 polypeptide=Potri.006G279300.1.p locus=Potri.006G279300 ID=Potri.006G279300.1.v4.1 annot-version=v4.1 ATGGCTCGTAAGGTAGCATATTGGCACCTGATGCTGCTGCTATTTTACATCATGGTCACGGCTTGCCAATTCTTTGTCACATCACATGGTGCAATTACTG ATGCTGAAATCCTTGTCAACTTCAAGAACTCTTTGTCTACAAACTCCTTGCTAAGCAATTGGAATGTGTCAGACAATCCTCCGTGCAATGGTAGCACCAA TAATTGGGTTGGTTTGCGTTGCAATGGTGATGGCACCATCGATAAGTTGCAACTTGAGAATATGGGCTTAACGGGCACCATCAACATAGACATCTTGACG CAATTGTCAAAGTTGAGAACATTAAGCTTCATGAATAATAGCTTGGAGGGTTCCATGCCTCAAGTGAAAAAACTTGGCCCCTTGAAAAACTTGTTTTTGT CTAACAACAGTTTCTCAGGTAAAATTGCCGAGGATGCATTTGATGGCATGAATTCATTGAGGGAAGTTCATTTGGCACACAATGAGTTTACTGGTGGAAT TCCAAGATCACTTGTTTCCGCGCAGAAACTAACAAAGTTGAGTCTTGAAGGGAATCAACTTGATGGGAAGTTACCTGGCTTTCCTCAAGAAAACTTGACT GTGTTTAATGCTGCAGATAACAATTTCGAGGGTCAGATTCCTGCTAGTCTTGCTCACTTCAGTCCAAGCTCTTTCACAGGGAATAAAGGGTTATGTGGAA AGCCACTGCCTGCGTGCAAATCATCCAAGAAAAAGATCATGATGATAATTGTGGTTACTGTTGTAGCTGTGGTTGCATTATCTGCTATTGTTGCCTTTTC CTGCATCTGTTGCCGCACAGCCAAAACACCCAAATTCAACTATTCCAAAAAGAAAATTGCCATGAATGGCGTTGGAAAAAAGGAAATTCAATCATCAGAT CAGTTTGGTGATGCAAAAACGGTTGATAATGGGCAGTTGCATTTTGTAAGATATGATAGGGGTAGATTTGACTTGCAAGACCTTCTTAAGGCCTCTGCTG AAGTCTTGGGCAGTGGTACTCTTGGTTCATCTTACAAGACAGTTCTTTCGGATGGACCTTCTATGGTTGTGAAGAGGTTTAGGCATATGAGTAACGTAGG GAATGAAGAATTTCATGAGCACATGAGAAAGTTGGGAACATTGTCACACCCTAACTTGCTCCCTCTAGTGGCATACTACTACAGAAAAGAAGAGAAGCTT TTGGTTTCTGACTTGATTGAAAATGGCAGCTTGGCTTCTCGTCTTCATGCCAAGCGTGCTCCGGGAAAACCATGGCTTGACTGGCCAACACGGCTGAAGA TTGTCAAAGGAGTTGCCAGGGGGTTGGTCTATCTCTACAAAGAGTTCCCAACATTAGCTCTGCCTCATGGTCACCTAAAATCCTCCAATGTGCTTCTAGA TGATACATTCGAGCCCCTCTTGACAGATTATGCTCTAGTTCCTTTGGTTAATAGAGACCATGCTCAACAAGTTATGGTTGCCTACAAGTCACCTGAATTC ACTCACTCTGACCGCACTACAAGGAAGACTGATGTGTGGAGTCTTGGTATACTAATTCTGGAAATCTTGACAGGCAAGTTCCCTGAAAATTATCTAATGC AAGGCAGGGGTGGCGGTGCAGATTTGGCAACTTGGGTTAACTCAGTTGTTAGAGAAGAGTGGACAGGAGAGGTATTTGATATGGATATAATGAGGACTAA GAATTGTGAGAAAGAGATGCTAAAGCTGTTGAAAACTGGGATGTGCTGCTGTGAATGGAATATGGAGAACAGGTGGGATTTGAAGGAGGCTGTAGCCAAA ATTGAGGATTTGAAGGAGAGAGACAATGACAATGATGACTTCAGTAATTCCTATGCAAGTGAAGTCTATTCTTCTAGAGCAATGACTGATGATGATTTCT CTTTCTCTGTCAATGGTTGA
AA sequence Show only first row Show all	>Potri.006G279300.1 pacid=42767717 polypeptide=Potri.006G279300.1.p locus=Potri.006G279300 ID=Potri.006G279300.1.v4.1 annot-version=v4.1 MARKVAYWHLMLLLFYIMVTACQFFVTSHGAITDAEILVNFKNSLSTNSLLSNWNVSDNPPCNGSTNNWVGLRCNGDGTIDKLQLENMGLTGTINIDILT QLSKLRTLSFMNNSLEGSMPQVKKLGPLKNLFLSNNSFSGKIAEDAFDGMNSLREVHLAHNEFTGGIPRSLVSAQKLTKLSLEGNQLDGKLPGFPQENLT VFNAADNNFEGQIPASLAHFSPSSFTGNKGLCGKPLPACKSSKKKIMMIIVVTVVAVVALSAIVAFSCICCRTAKTPKFNYSKKKIAMNGVGKKEIQSSD QFGDAKTVDNGQLHFVRYDRGRFDLQDLLKASAEVLGSGTLGSSYKTVLSDGPSMVVKRFRHMSNVGNEEFHEHMRKLGTLSHPNLLPLVAYYYRKEEKL LVSDLIENGSLASRLHAKRAPGKPWLDWPTRLKIVKGVARGLVYLYKEFPTLALPHGHLKSSNVLLDDTFEPLLTDYALVPLVNRDHAQQVMVAYKSPEF THSDRTTRKTDVWSLGILILEILTGKFPENYLMQGRGGGADLATWVNSVVREEWTGEVFDMDIMRTKNCEKEMLKLLKTGMCCCEWNMENRWDLKEAVAK IEDLKERDNDNDDFSNSYASEVYSSRAMTDDDFSFSVNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31250			Leucine-rich repeat protein ki...		Potri.006G279300 [exp]	0	1
AT5G41810			unknown protein		Potri.001G093500 [exp]	4.12	0.8403
AT1G16670			Protein kinase superfamily pro...		Potri.006G128500 [exp]	9.16	0.7878
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	9.74	0.7861
AT4G22530			S-adenosyl-L-methionine-depend...		Potri.007G101800 [exp]	15.19	0.7683
AT1G17500			ATPase E1-E2 type family prote...		Potri.001G081200 [exp]	26.32	0.7945
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	56.92	0.7368
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.014G159700 [exp]	79.39	0.7568
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.006G070000 [exp]	90.11	0.7624
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	143.17	0.7426
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.016G125400 [exp]	190.98	0.7230

Compare expression of checked genes

Potri.006G279300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.