Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31240 543 / 0 protein kinase C-like zinc finger protein (.1.2) AT1G60420 309 / 3e-100 DC1 domain-containing protein (.1) AT2G37820 41 / 0.001 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G060200 [exp] 296 / 1e-95 AT1G60420 679 / 0.0 DC1 domain-containing protein (.1) Potri.010G059401 [exp] 296 / 2e-95 AT1G60420 667 / 0.0 DC1 domain-containing protein (.1) Potri.010G059550 [exp] 296 / 2e-95 AT1G60420 658 / 0.0 DC1 domain-containing protein (.1) Potri.010G059700 [exp] 295 / 6e-95 AT1G60420 680 / 0.0 DC1 domain-containing protein (.1) Potri.010G059900 [exp] 293 / 4e-94 AT1G60420 652 / 0.0 DC1 domain-containing protein (.1) Potri.010G060300 [exp] 290 / 6e-94 AT1G60420 560 / 0.0 DC1 domain-containing protein (.1) Potri.010G059600 [exp] 290 / 7e-93 AT1G60420 666 / 0.0 DC1 domain-containing protein (.1) Potri.010G060100 [exp] 285 / 7e-91 AT1G60420 654 / 0.0 DC1 domain-containing protein (.1) Potri.005G244700 [exp] 278 / 3e-90 AT1G60420 298 / 8e-96 DC1 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013017 [exp] 298 / 7e-96 AT1G60420 624 / 0.0 DC1 domain-containing protein (.1) Lus10017252 [exp] 282 / 2e-91 AT1G60420 311 / 1e-100 DC1 domain-containing protein (.1) Lus10005618 [exp] 266 / 1e-85 AT1G60420 300 / 2e-96 DC1 domain-containing protein (.1) Lus10029148 [exp] 61 / 6e-11 AT1G60420 121 / 5e-33 DC1 domain-containing protein (.1) Lus10022305 [exp] 45 / 0.0001 AT3G01680 744 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein Lus10000548 [exp] 44 / 0.0002 AT3G01680 677 / 0.0 Sieve-Element-Occlusion-Related 1, sieve element occlusion b, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF13905 [poplar] [flax] Thioredoxin_8 Thioredoxin-like
Representative CDS sequence Show only first row Show all	>Potri.006G279400.8 pacid=42769899 polypeptide=Potri.006G279400.8.p locus=Potri.006G279400 ID=Potri.006G279400.8.v4.1 annot-version=v4.1 ATGGCAGGGCTTGATGGTCAAGCTAAATTTGTTGAGGGCAGTGACTTCGTGGCCATCTTATCATCTCAAGGGATAGATTATCTTTTATCTGGTGAAGGAA AGGTGCCCTTGTCATCATGTGATTGTAAGGTAATTTGCCTCTTCTTCTCGGCAAACTGGTGCAGGCCATGTAAAGCATTTGCTCCCCAGCTTGTGAAAAT TTATAATAGCCTAAGAGGTACTGGTAAAAAACTAGAGATTGTCTTCATCTCCTTTGATCGCGATGAGGATGGATTCAAGGAACACTTCAAGTGTATGCCA TGGCTTGCAGTCCCATTTGAAGTAAACTTGCATAGACATTTGAGTGACATCTATCATGTTAATCGCATTCCATCATGTATCTCGTTGGGTTCAGATGGAA TATCAGTTGAAGAAGATATGATTGGATTGATAGAAGACTTTGGTGCTGAAGCATTTCCCTTCACCAGGGAAAGATTCGACGAACTGAGGTCTATCGATGA TGCAAAGCGCCAGGGAGGAAAATTACAGCAACTTCTGGCACATGAAGGACGAAACTATGTTTTATCAGGAGATACTAGAAAGATATTTGTATCTGAACTT GTTGGCAAGACAATAGGCCTTTACTTTGGCGCACACTGGTGCCCTCCAAGCCGTGCCTTCACTACGCAACTTATCCAAAATTACAATGAGATCATAACCA CTAATGATGGATGCTTTGAAATTATCTTAGTCTCTACAGACCGAGACCTTAAAGAATTTAATACCAACCTAAGTAACATGCCATGGCTTGCTATTCCATA CGAGGACAGGACACGGCAAGACCTTTGCAGGATCTTTAACATTAAAGGGATTCCAGCTTTGGTCATTATTGGACAAGATGGGAAGATCATTAGAACAGAT GGGAAAGCCATGATTTCCTTATATGGTGCTAAGGCTTTCCCATTTACAGAGTCAAGGATTACAGAGATCGAAGCAACTTTGAAGGAGGAAGGAGATGCAT TACCTCGGCAAGTAAAAGATATAAAGCACCAACATGCTCTGAAGTTGGACATGGCAAAAGCATATGTATGTGACTGCTGCAACGGGCAAGGCAAGTTCTG GGCATTCTCTTGTGATGTGTGTGATTATGACCTTCATCCAGCATGTGTAGAAGAGGCATGCTCAGACTGTTTAATGAAAGTCCGCGATATTAATTTAACA GCCTAA
AA sequence Show only first row Show all	>Potri.006G279400.8 pacid=42769899 polypeptide=Potri.006G279400.8.p locus=Potri.006G279400 ID=Potri.006G279400.8.v4.1 annot-version=v4.1 MAGLDGQAKFVEGSDFVAILSSQGIDYLLSGEGKVPLSSCDCKVICLFFSANWCRPCKAFAPQLVKIYNSLRGTGKKLEIVFISFDRDEDGFKEHFKCMP WLAVPFEVNLHRHLSDIYHVNRIPSCISLGSDGISVEEDMIGLIEDFGAEAFPFTRERFDELRSIDDAKRQGGKLQQLLAHEGRNYVLSGDTRKIFVSEL VGKTIGLYFGAHWCPPSRAFTTQLIQNYNEIITTNDGCFEIILVSTDRDLKEFNTNLSNMPWLAIPYEDRTRQDLCRIFNIKGIPALVIIGQDGKIIRTD GKAMISLYGAKAFPFTESRITEIEATLKEEGDALPRQVKDIKHQHALKLDMAKAYVCDCCNGQGKFWAFSCDVCDYDLHPACVEEACSDCLMKVRDINLT A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	0	1
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Potri.002G127000 [exp]	1.41	0.9372
AT1G69588		CLE45	CLAVATA3/ESR-RELATED 45 (.1)		Potri.010G169300 [exp]	2.00	0.9165
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	2.44	0.9273
					Potri.012G085800 [exp]	3.46	0.9281
AT2G18196			Heavy metal transport/detoxifi...		Potri.001G452400 [exp]	5.83	0.8535
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G110800 [exp]	6.00	0.8502
AT3G60720		PDLP8	plasmodesmata-located protein ...		Potri.002G145400 [exp]	6.00	0.8806
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.019G038184 [exp]	6.32	0.8899
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060000 [exp]	6.92	0.8577
					Potri.014G030700 [exp]	7.00	0.8941

Compare expression of checked genes

Potri.006G279400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.