Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31210 1234 / 0 DNA topoisomerase, type IA, core (.1) AT5G63920 108 / 1e-23 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1) AT2G32000 77 / 4e-14 DNA topoisomerase, type IA, core (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G067100 [exp] 107 / 3e-23 AT5G63920 1389 / 0.0 topoisomerase 3alpha (.1) Potri.014G148800 [exp] 67 / 9e-11 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020186 [exp] 1239 / 0 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1) Lus10026990 [exp] 715 / 0 AT4G31210 668 / 0.0 DNA topoisomerase, type IA, core (.1) Lus10026991 [exp] 508 / 3e-168 AT4G31210 490 / 4e-160 DNA topoisomerase, type IA, core (.1) Lus10035035 [exp] 68 / 4e-11 AT2G32000 1363 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10004959 [exp] 62 / 3e-09 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1) Lus10020187 [exp] 53 / 9e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01131 [poplar] [flax] Topoisom_bac DNA topoisomerase CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01396 [poplar] [flax] zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain CL0413 [poplar] [flax] PF13368 [poplar] [flax] Toprim_C_rpt Topoisomerase C-terminal repeat
Representative CDS sequence Show only first row Show all	>Potri.006G279700.1 pacid=42768200 polypeptide=Potri.006G279700.1.p locus=Potri.006G279700 ID=Potri.006G279700.1.v4.1 annot-version=v4.1 ATGAGGGAGATGAAGAGCTTTTTATCACTCTCTACTTCTTCATCTGCTACAGTTTTCCATTTTCGTCCTCTCATGGCTAAGTTACAATGTCGGACTTTTC AGAATTATCCAGCATCTCACTTGCCAATTGGTACTACTTGTCGTAATTACATGCAATGCTCACAGATTAAATTAAAAAAAGATAGACTCTCTTTCATTAT CTCCATCAACCATTCTCAGAGTCTCACCAATGGAGGGTCCATGTCCATGTCTTCGGCCATTAATTCCCACTTAAGCCCTGGGAGCCTTTTAAATTATTGG TCTTTTAACAATGGTAATACACTGACTTCTCTTGAAAGTGGTGTATTTGCTAAGAGGCTTTTTTCAACAGCCTCAAGAGGGTCAAATAATAAGAATCAAA ATGTGGGTGGATTTAGTAAACATTGGAAAAAGCCAAAGGCATCGGGTGCTGCTCATGATAAAGATGAAACTAACACAAACTCTCGTATCTCGGCTTCTAA AGATGTTGATGCTGTTACTTCAACCGAAACAGCTGTTGGAGATGCAAAGCTGGGTTCAGCAGTTTCAAGAACGAGAAACAAAAAATCCAAAGTTAATGAA ACAGAGAAGAAGGAATCCAAAAGCAAGAAAAACAAGGGAGAAGCTTCTTTCACTGCTGTTTCAGAAAAAGCTGCTGGGGCAAAATCTATGACAACGACTT CCCAATTAAAGAAGTCTCTTCCTAGCAAAAGTGGCCAGGTTGCTGCACGAGCTTCACAGAAAAAAGCAACTGAGGAAATGCCCAATGGTTCAACAAAACA ACAGTCCAACAAGAAAAACGGTAACTCTAGTATAAAGAGAACAACTAAAAAGGCAGTTAATGGATCAGCAGAGAAACAGAAACCCCAAAAGATAGGCAAA TTGCAACCTTTTGCACAAGGGAAACTGAAGTCACTATATCCTTCAGCAGGGAAATGTGTTGTGGTGGTTGAATCTGTAACAAAGGCCAAGGTGATTCAGG GGTATCTTGGTGATATGTATGAAGTTTTGCCTAGCTATGGTCATGTAAGGGACTTGGCTGCAAGGTCTGGATCTGTCCGACCTGATGATGATTTTAGTAT TGTGTGGGAGGTTCCTTCTGCTGCCTGGACTCATCTTAATAGCATTAAGGTTGCACTAAGCGGAGCAAAAATTCTTATCCTTGCATCAGATCCTGATCGT GAAGGAGAGGCTATTGCTTGGCATATTGTTGAGATGTTGCAACAACAGGATGCCTTACGCCAAGATCTTACGGTAGCAAGAGTTGTCTTTCATGAAATAA CAGAGACATCCATAAAAAATGCTTTGCAAGCACCAAGAGGAATTGACGTAAACTTAGTTCATGCTTACCTTGCTCGACGTGCTCTTGATTATTTGATTGG GTTCAACATCTCACCATTGTTGTGGAGGAAATTACCAGGTTGCCAGTCAGCTGGGCGAGTTCAATCAGCTGCATTATCACTTTTATGTGACAGGGAAATG GAAATTGATGAATTCAATTCGCAGGAGTATTGGACTATTGGTGCTAAGTTGAAGAAACAGGAGCAAGATTCTTTAGTGAATGCACACTTGACCCATTTTG ATTCCAAAAAGTTGAATCAATTCTCAATTAGTTCTGACACAGAGGCAAAGGATATGGAACAGAAGATTAATTCTGCTGACTTTCAAGTTGTTGGCTCTAA AAAAACCAAAACACATAGAAATCCTCCCACTCCGTATATAACATCAACACTTCAACAGGATGCTGCAAACAAATTAGATTTTGCCACATCATACACGATG AAGGTCGCACAGAAGCTTTATGAAGGGGTTCAGTTATCAGATGGGAAGGCAACTGGGTTGATAACTTACCTCAGGACAGATGGACTGCATATTTCGGATG AAGCTGTTGGAAACATACGTTCCTTGATCATTGAAAGATATGGGCAAGATTTCGCATCGAAGGGTCCACGCAAGTATTTTAGGAAGGTGAAGAATGCTCA AGAGGCCCATGAAGCAATCAGACCCACCAATATTCATCTTTTACCATCAATGCTTGTTGGAGTACTTGATGAAGATTCCTTGAAGCTATACACACTAATC TGGTCTCGGACAGTTGCATGCCAGATGGAACCTGTTACTATTGAGCAGGTGCAAGTTGACATTGGGAATGCTGGAAAGTCCATTGTTTTTAGATCTTCAT GCTCAAGAGTTGAGTTTCCTGGATATCAGGCAGTTTATGAGGATGTTGAGGCTGGAGCTGTAAGATATAAGGAAAGTGATGCACTCAATCGTCAAGAGGC TTTTGGAATTCTTGATTCACTTAAGACAGGAGATTCATTGTATCTTGGTGAAGCAGATATGAAACAGCACTTTACTGAGCCTCCGCCACGCTACTCTGAG GGATCACTGGTTAAGAAGCTCGAGGAACTTGGCATTGGAAGACCTTCAACATATGCAAGCACACTGAAAGTCTTAAAGGATAGGAACTATGTGACTGTAA AAAACCGTGTACTGCATCCAGAATTTCGTGGTCGCATGGTGTCAGCATTTCTCTCTCACCATTTTACTGAGGTCACGGACTACAGCTTTACTGCTGATAT GGAGACTGAGCTTGACAATGTTTCTGCTGGCTTAACTGATTGGAAAGGCCTTCTAAAAGATTACTGGACACGATTTCAGTTGTATTGTAGCCGTACTGAA AGTGTCCATATTCACCAGGTGGAGAAGATGTTGGAGAGAACATATGACCGCTTTTTGTTTGGTTCACTCCCTGATAAAAGCAGAACATGCCCAAGTTGTA TGGAGGGCACTTTGATATTCAAAGTAAGTAGGTTTGGTGCAGGCTATTTTATTGGATGCGATCAACACCCAAACTGCAAGTACATTGCAAAGACGTTATA TGGTGATGATGAGAAAGAAGAAACTCCTCAAAGTTCTAGTGTTGATGAACCAAAACTGCTTGGTGTTCATCCGACTTCCAATGAAAAGGTTCTTTTGAAG AATGGTCCTTATGGATACTATGTACAGCTTGGAGAAGACAGGAAGGGTTACGCTCCTAAAAGATCTTCTGTTTCTCATATAAAGGATGTGGGTGCTATTA CTCATGAAGTTGCTCTCAACTTGTTACGCTACCCTCTGACATTGGGTGACCATCCAAAGGATGGGTATCCTGTGATGATAAAGCTCGGAAAGGGGGGATA CACAGTTAAACATCGTCGTACAATGGCTTCTGTTCCCAAGAACTTGAAGCCGGAGAAGATTACAATGGAGAAAGCATTGGAGCTTTTATCAGGTAAAAAT GTAAGTCATTCTGGCAGGCCGAAGAGCAAGCCGAAAGTAGAAGAAGCTGTTGAGGCCATGTAG
AA sequence Show only first row Show all	>Potri.006G279700.1 pacid=42768200 polypeptide=Potri.006G279700.1.p locus=Potri.006G279700 ID=Potri.006G279700.1.v4.1 annot-version=v4.1 MREMKSFLSLSTSSSATVFHFRPLMAKLQCRTFQNYPASHLPIGTTCRNYMQCSQIKLKKDRLSFIISINHSQSLTNGGSMSMSSAINSHLSPGSLLNYW SFNNGNTLTSLESGVFAKRLFSTASRGSNNKNQNVGGFSKHWKKPKASGAAHDKDETNTNSRISASKDVDAVTSTETAVGDAKLGSAVSRTRNKKSKVNE TEKKESKSKKNKGEASFTAVSEKAAGAKSMTTTSQLKKSLPSKSGQVAARASQKKATEEMPNGSTKQQSNKKNGNSSIKRTTKKAVNGSAEKQKPQKIGK LQPFAQGKLKSLYPSAGKCVVVVESVTKAKVIQGYLGDMYEVLPSYGHVRDLAARSGSVRPDDDFSIVWEVPSAAWTHLNSIKVALSGAKILILASDPDR EGEAIAWHIVEMLQQQDALRQDLTVARVVFHEITETSIKNALQAPRGIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLLCDREM EIDEFNSQEYWTIGAKLKKQEQDSLVNAHLTHFDSKKLNQFSISSDTEAKDMEQKINSADFQVVGSKKTKTHRNPPTPYITSTLQQDAANKLDFATSYTM KVAQKLYEGVQLSDGKATGLITYLRTDGLHISDEAVGNIRSLIIERYGQDFASKGPRKYFRKVKNAQEAHEAIRPTNIHLLPSMLVGVLDEDSLKLYTLI WSRTVACQMEPVTIEQVQVDIGNAGKSIVFRSSCSRVEFPGYQAVYEDVEAGAVRYKESDALNRQEAFGILDSLKTGDSLYLGEADMKQHFTEPPPRYSE GSLVKKLEELGIGRPSTYASTLKVLKDRNYVTVKNRVLHPEFRGRMVSAFLSHHFTEVTDYSFTADMETELDNVSAGLTDWKGLLKDYWTRFQLYCSRTE SVHIHQVEKMLERTYDRFLFGSLPDKSRTCPSCMEGTLIFKVSRFGAGYFIGCDQHPNCKYIAKTLYGDDEKEETPQSSSVDEPKLLGVHPTSNEKVLLK NGPYGYYVQLGEDRKGYAPKRSSVSHIKDVGAITHEVALNLLRYPLTLGDHPKDGYPVMIKLGKGGYTVKHRRTMASVPKNLKPEKITMEKALELLSGKN VSHSGRPKSKPKVEEAVEAM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	1.41	0.9256
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	3.00	0.8979
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	4.00	0.9074
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	6.32	0.8578
AT3G17630		ATCHX19	cation/H+ exchanger 19, cation...		Potri.010G005200 [exp]	7.48	0.8741
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	9.59	0.8965
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	11.48	0.8658
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.019G132800 [exp]	14.89	0.8762	Pt-STA1.1
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	16.43	0.8889
AT3G17630		ATCHX19	cation/H+ exchanger 19, cation...		Potri.010G004800 [exp]	20.78	0.8241

Compare expression of checked genes

Potri.006G279700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.