Plant FIBer expression Database

Potri.006G279800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31200 579 / 0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G002000
[exp]
867 / 0 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Potri.012G058100
[exp]
52 / 1e-06 AT5G23080 837 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008260
[exp]
660 / 0 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Lus10016927
[exp]
657 / 0 AT4G31200 587 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Lus10009612
[exp]
53 / 9e-07 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Lus10000866
[exp]
53 / 9e-07 AT5G23080 829 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Lus10025704
[exp]
43 / 0.0006 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01805 Surp Surp module
CL0020 TPR PF04818 CID CID domain
Representative CDS sequence
>Potri.006G279800.1 pacid=42767841 polypeptide=Potri.006G279800.1.p locus=Potri.006G279800 ID=Potri.006G279800.1.v4.1 annot-version=v4.1
ATGGATAGGCAGCAACCGCAGCCCCATGACTATGCTGCAATGGCATATGCTCAGCAGCAGCCACAATATGGACACCATCCGCCTCCACATCAACACCAAC
AATACCCTCCCCCACTTAATCCCTTCATGCCTCCTCATTCTTCAGTGCAGCAATTCCCTTACACTCAACCTCCTCTACACCCTCACCATCTTCAACTCCC
TCCGCAGCAACAGCAGCACCCTCCACCTTTTGCTCCGCATTTACCCCCTCACCTTATTCCTCCGCCTTTCCATGCTCCTAATTATGATTCTCCCTCACCC
CCGGCCCCCCCTCCTTCCGATCCTGAGCTTCAAAAACGTATTGATAAGCTTGTTGAGTATTCTGCAAAGAATGGGCCTGAATTCGAAGTCATGATTCGTG
AAAAACAGCAGGATAATCCCGCTTATAGTTTCCTTTATGGAGGAGAGGGTCATGCATATTATCGGTATAAGCTTTGGTTATCTACACGTGGTCCTTTCAA
TCCTCCTTTCCAAGCATCTTCCATGATGCATCCACAACCAAACCCAATGATGAATGCTGCTATTGGGCCTCCCCCTCAAATGCACCAGCCTCCTTTTCCA
CCTTTTTATGATCACCATCAGCAGCATCCTCCACAGCCCTTTGGCGCTCATGGTCGACCAGATTTTGAATCACCCAAGTCCTTTAGAGGACTCTCTGGTC
CACTTCCTCCTGATATTGCAGTGGAGCTCAGTAATGTGCTTAACACTCTAAATGGTACCAAGGAGTCTATCAAAGGTGCCAAGACTTGGTTCATGCAGAG
GTCTCCATTTGCACCAGCTCTCGTCGAAGCACTCAGAGACAGGATTGTTGCTCTTGATGATTCTGAGAGGCAATTGCATATCATCTATCTTGCCAATGAT
ATTCTTTTTGACAGTTTGCAAAGGAGAATTAATCCCCGTGATCTTGATAATGAAGCCCTTGCATTTAAGCCAGTGCTAGGTTCCATGCTTGCAAGGATTT
ATCACTACCCTCAGAATAAGGATGAAAACCAGTCACGGTTGCAGAAAATTGTGCAGTTTTGGGCCTCAAAGGAGGTCTACGATCAAGATACCATTTATAA
ACTTGAAAGTGAGATGGTTGCTGGACCGCGGGCAAATTCTTTTCCAGGGCCGCCAAAAGAATTATGTACTGGCTCAGCAGATTCTGTGCCCGCTGCAGGC
TTTCCTCAGCATGCAACTAGTTACAATGCTCCACAATGGCTGCCTGATAGGCAGAGTGTACCAGATCAGGAGCATCCCGATAAACAAGTGCCTCCAGTCA
TGCTTCCAACCTTAGGAAATCAGCAATTCATTCCAAATTCAGTCCCTGCTGCTGCTTTTCCGGGTTCCCTGCCTGTAAATCCGTCTGTTCCACCAGCAAG
TCAACAACCTGCACCACATTTATTGCAAGCACCTCCTGCTAACATTGCTGAAAAATTGTCACCATATCCCCTGTTCCCACCTGGTCTCATTCCTGGAATG
GTCAGAAAGATGCAGATTGGCAGTGGGGTACCCTACTCACCTTTGAGCCCTTTGGACATCCCGACAACCATACCCCCATCCAATGTATCCCCATCAGAAA
TTCTAGACAGTGTGTCAAAGTTTTTTAAAGAGATTGGAGAGGTTAACCCGTCTGAGGGACCGATGATATCTGATCCAAAAGATGAAGATGACGAGTATGA
GAGAGAGCCTCCCATTCGCAAAGGAGGAGCTTGCATCCCTCCTCCTCCAAACTTACAGGTTGACCCAGAGACAGGAGCTTATGCAGATGGAAGTGTGGAG
CGGAAACATGGAAGTGGCTCAGGAAGATTGGGACTTGGGGCAGCAGCCGATCCTAACGAGCCAAGTCAATACGATGATGTTTACACATCTTACAGGAAAC
AGAGAAGCACCACCTATCATTCATCGATGGTTGCAAGGGCTGTTACTAGGTAA
AA sequence
>Potri.006G279800.1 pacid=42767841 polypeptide=Potri.006G279800.1.p locus=Potri.006G279800 ID=Potri.006G279800.1.v4.1 annot-version=v4.1
MDRQQPQPHDYAAMAYAQQQPQYGHHPPPHQHQQYPPPLNPFMPPHSSVQQFPYTQPPLHPHHLQLPPQQQQHPPPFAPHLPPHLIPPPFHAPNYDSPSP
PAPPPSDPELQKRIDKLVEYSAKNGPEFEVMIREKQQDNPAYSFLYGGEGHAYYRYKLWLSTRGPFNPPFQASSMMHPQPNPMMNAAIGPPPQMHQPPFP
PFYDHHQQHPPQPFGAHGRPDFESPKSFRGLSGPLPPDIAVELSNVLNTLNGTKESIKGAKTWFMQRSPFAPALVEALRDRIVALDDSERQLHIIYLAND
ILFDSLQRRINPRDLDNEALAFKPVLGSMLARIYHYPQNKDENQSRLQKIVQFWASKEVYDQDTIYKLESEMVAGPRANSFPGPPKELCTGSADSVPAAG
FPQHATSYNAPQWLPDRQSVPDQEHPDKQVPPVMLPTLGNQQFIPNSVPAAAFPGSLPVNPSVPPASQQPAPHLLQAPPANIAEKLSPYPLFPPGLIPGM
VRKMQIGSGVPYSPLSPLDIPTTIPPSNVSPSEILDSVSKFFKEIGEVNPSEGPMISDPKDEDDEYEREPPIRKGGACIPPPPNLQVDPETGAYADGSVE
RKHGSGSGRLGLGAAADPNEPSQYDDVYTSYRKQRSTTYHSSMVARAVTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G31200 SWAP (Suppressor-of-White-APri... Potri.006G279800
[exp]
0 1
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
1.73 0.9356 ELF5.2
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
2.00 0.9335
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.012G093000
[exp]
2.00 0.9167
AT1G73840 ESP1 ENHANCED SILENCING PHENOTYPE 1... Potri.012G056200
[exp]
3.74 0.9047
AT5G14540 Protein of unknown function (D... Potri.012G083200
[exp]
4.69 0.8913
AT3G22440 FRIGIDA-like protein (.1) Potri.018G078701
[exp]
6.70 0.9121
AT1G06270 Pentatricopeptide repeat (PPR)... Potri.013G124100
[exp]
8.30 0.8757
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.008G012250
[exp]
8.94 0.8981
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
11.95 0.8901
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
13.03 0.8804

Potri.006G279800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.