Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24360 642 / 0 Protein kinase superfamily protein (.1) AT4G31170 635 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G62400 280 / 2e-91 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G35780 261 / 2e-81 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 257 / 5e-80 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 255 / 1e-79 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G58950 253 / 9e-79 Protein kinase superfamily protein (.1) AT3G63260 240 / 1e-75 ATMRK1 Protein kinase superfamily protein (.1.2) AT3G27560 237 / 1e-74 ATN1 Protein kinase superfamily protein (.1) AT5G50180 236 / 2e-74 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G001900 [exp] 736 / 0 AT2G24360 648 / 0.0 Protein kinase superfamily protein (.1) Potri.006G280000 [exp] 729 / 0 AT4G31170 677 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.018G001800 [exp] 721 / 0 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.012G080000 [exp] 280 / 1e-91 AT1G62400 405 / 9e-142 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.015G075200 [exp] 278 / 6e-91 AT1G62400 404 / 2e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.011G022800 [exp] 273 / 1e-88 AT1G62400 613 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.004G001900 [exp] 271 / 7e-88 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Potri.005G082200 [exp] 268 / 5e-85 AT5G58950 607 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179457 [exp] 262 / 1e-83 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020374 [exp] 659 / 0 AT4G31170 697 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Lus10009550 [exp] 454 / 5e-150 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10020018 [exp] 277 / 7e-90 AT1G62400 620 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10011173 [exp] 270 / 6e-86 AT5G58950 567 / 0.0 Protein kinase superfamily protein (.1) Lus10015541 [exp] 277 / 9e-86 AT1G62400 623 / 0.0 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10015436 [exp] 268 / 4e-85 AT5G58950 572 / 0.0 Protein kinase superfamily protein (.1) Lus10025442 [exp] 266 / 1e-84 AT5G58950 510 / 2e-178 Protein kinase superfamily protein (.1) Lus10022653 [exp] 265 / 1e-83 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10042122 [exp] 261 / 1e-83 AT1G62400 404 / 7e-141 high leaf temperature 1, Protein kinase superfamily protein (.1) Lus10023989 [exp] 266 / 3e-83 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G279900.2 pacid=42768109 polypeptide=Potri.006G279900.2.p locus=Potri.006G279900 ID=Potri.006G279900.2.v4.1 annot-version=v4.1 ATGGTGGAGGGTAAAAAATTTACTGGACTAATGGCACCAAGTAACAACAATGGTAACGACTATTATGGTTTCACACAAGGTTTTTACCAAGAAATTGGTG ATGGTACAAACATGTCCATTGACAGTTTACAAACAAGCCATGCTGGTGGGTCTGTCTCGATGTCAGTGGACAACAGTAGTGTCGGATCCAATGATTCTTT AACACACATGTTAAGCCATCCTGGTTTGAAACCTGTCAACCACCGTAACTACAATGTCTCAGTGGGCGCGAGTGTGTTTCGTCCAGGGAAAGTCACCCAT GCCCTAAATGACGATGCATTAGCGCAAGCATTGATGGATAATCGGTATCCAACCGAAGGACTCCAGCATTATGATGACTGGACAATCGATTTGAGAAAAC TCAATATGGGTACAGCTTTTGCTCAAGGTGCTTTTGGAAAGTTATACAGAGGGACATATAATGGGGAGGATGTTGCGATTAAGATATTAGAGAGGCCTGA GAATATCCCAGAAAAGTCACAAGTGATGGAACAGCAGTTCCAGCAGGAAGTTATGATGCTTGCAAATTTAAAGCACCCGAACATTGTGCGGTTTATTGGT GCATGCCAGAAGCCAATGGTTTGGTGTATCGTCACAGAATATGCAAAAGGTGGGTCAGTTCGGCAGTTTTTGACTAGGAGGCACAATCGGGCAGTGCCAT TGAAATTAGCAGTCCAGCAGGCTTTGGATGTTGCGAGAGGAATGGCATATGTTCATGGACTTGGGTTTATACACCGGGATTTGAAGTCAGATAACCTCTT AATTGCAGCAGATAAATCCATAAAAATTGCTGATTTTGGTGTTGCACGGATTGAGGTGCAGACTGAAGGGATGACACCGGAAACTGGGACATACCGCTGG ATGGCTCCAGAGATGATTCAGCATAGGCCTTATACACAAAAGGTGGATGTGTATAGCTTTGGAATCGTTCTCTGGGAGCTCATAACAGGTTCGCTTCCCT TCCAGAACATGACAGCTGTGCAGGCTGCATTTGCTGTGGTGAACAAGGGGGTAAGGCCAATTATCCCATATGAATGTCTGCCTGTGCTGAGTGACATAAT GACCCGCTGCTGGGACGCCAACCCTGAAGTGCGTCCTCCCTTCACCGAGATTGTTAGGATGCTTGAGAATGCTCAAACTGAGATCATGACTAATGTGCGC AAGGCTCGCTTCAGGTGTTGCATGGCTCAACCCATGACAGTTGAATGA
AA sequence Show only first row Show all	>Potri.006G279900.2 pacid=42768109 polypeptide=Potri.006G279900.2.p locus=Potri.006G279900 ID=Potri.006G279900.2.v4.1 annot-version=v4.1 MVEGKKFTGLMAPSNNNGNDYYGFTQGFYQEIGDGTNMSIDSLQTSHAGGSVSMSVDNSSVGSNDSLTHMLSHPGLKPVNHRNYNVSVGASVFRPGKVTH ALNDDALAQALMDNRYPTEGLQHYDDWTIDLRKLNMGTAFAQGAFGKLYRGTYNGEDVAIKILERPENIPEKSQVMEQQFQQEVMMLANLKHPNIVRFIG ACQKPMVWCIVTEYAKGGSVRQFLTRRHNRAVPLKLAVQQALDVARGMAYVHGLGFIHRDLKSDNLLIAADKSIKIADFGVARIEVQTEGMTPETGTYRW MAPEMIQHRPYTQKVDVYSFGIVLWELITGSLPFQNMTAVQAAFAVVNKGVRPIIPYECLPVLSDIMTRCWDANPEVRPPFTEIVRMLENAQTEIMTNVR KARFRCCMAQPMTVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	0	1
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	1.73	0.9211	Pt-NAC2.1,NAC049
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.006G033201 [exp]	2.00	0.9003
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Potri.007G109100 [exp]	5.47	0.8897
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	7.14	0.8925
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	7.21	0.8918
AT3G60410			Protein of unknown function (D...		Potri.002G136200 [exp]	8.06	0.8806
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	10.24	0.8891	RIN4.1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	15.29	0.8643	ATCNGC19.5
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	15.32	0.8905
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.002G061400 [exp]	18.76	0.8861

Compare expression of checked genes

Potri.006G279900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.